Orcinus orca

killer whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mOrcOrc1: GCA_937001465.1 mOrcOrc1: GCA_937001455.1
ENA mOrcOrc1: GCA_937001465.1 mOrcOrc1: GCA_937001455.1
UCSC Genome Browser mOrcOrc1: GCA_937001465.1 mOrcOrc1: GCA_937001455.1

metadata.yaml (view) (edit on github)
species:
  short_name: mOrcOrc
  name: Orcinus orca
  taxon_id: 9733
  common_name: killer whale
  order:
    name: Artiodactyla
  family:
    name: Delphinidae
  individuals:
    - short_name: mOrcOrc1
      biosample_id: SAMEA8798143
      sex: female
  genome_size:
  genome_size_method:
  project: [ vgp ]
public domain, Robert Pittman (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mOrcOrc1 98.00 Gbp 37.02x 64.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.65 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mOrcOrc1 PacBio HiFi (.bam) 98.00 Gbp 37.02x 64.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.65 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 25 March 2022
mOrcOrc1.pri.cur.20220325.fasta.gz (726.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 110.04 Mbp 1 201.93 Mbp
20 4 96.38 Mbp 2 185.16 Mbp
30 7 90.74 Mbp 4 149.30 Mbp
40 10 74.14 Mbp 6 120.88 Mbp
50 15 45.58 Mbp 8 114.22 Mbp
60 21 36.63 Mbp 10 105.97 Mbp
70 29 30.40 Mbp 13 91.54 Mbp
80 40 20.90 Mbp 16 88.00 Mbp
90 57 8.16 Mbp 19 61.27 Mbp
100 570 15.59 Kbp 447 15.59 Kbp
1.000x 571 2.65 Gbp 448 2.65 Gbp
NG based on genome size 2.65 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 25 March 2022
mOrcOrc1.alt.cur.20220325.fasta.gz (516.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 96 1.26 Mbp 96 1.26 Mbp
20 286 0.84 Mbp 286 0.84 Mbp
30 549 0.62 Mbp 549 0.62 Mbp
40 891 483.58 Kbp 891 483.58 Kbp
50 1337 374.48 Kbp 1337 374.48 Kbp
60 1919 280.67 Kbp 1919 280.67 Kbp
70 2723 198.37 Kbp 2723 198.37 Kbp
80 3951 114.41 Kbp 3951 114.41 Kbp
90 6607 45.88 Kbp 6607 45.88 Kbp
100 12409 3.90 Kbp 12409 3.90 Kbp
1.000x 12410 1.88 Gbp 12410 1.88 Gbp
NG based on genome size 2.65 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.