Oryctolagus cuniculus

rabbit

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mOryCun
  name: Oryctolagus cuniculus
  taxon_id: 9986
  common_name: rabbit
  order:
    name: Lagomorpha
  family:
    name: Leporidae
  individuals:
    - short_name: mOryCun1
      biosample_id: SAMEA112468037
      sex: female
  genome_size: 3188280000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mOryCun1 99.13 Gbp 31.09x 44.5 GiB
Arima mOryCun1 541.18 Gbp 169.74x 132.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.19 Gbp.
Last upload on 13 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mOryCun1 PacBio HiFi (.bam) 99.13 Gbp 31.09x 44.5 GiB
Arima 541.18 Gbp 169.74x 132.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.19 Gbp.
Last upload on 13 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 August 2024
mOryCun1.pri.cur.20240817.fasta.gz (801.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 61 4.20 Mbp 2 200.06 Mbp
20 147 3.36 Mbp 4 176.14 Mbp
30 253 2.74 Mbp 5 170.52 Mbp
40 383 2.21 Mbp 7 164.46 Mbp
50 544 1.79 Mbp 10 134.33 Mbp
60 750 1.36 Mbp 12 123.71 Mbp
70 1026 0.96 Mbp 15 97.68 Mbp
80 1451 0.56 Mbp 19 68.40 Mbp
90 0 0
100 0 0
0.880x 2498 2.80 Gbp 222 2.80 Gbp
NG based on genome size 3.19 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 17 August 2024
mOryCun1.alt.cur.20240817.fasta.gz (435.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 298 0.76 Mbp 298 0.76 Mbp
20 837 472.83 Kbp 837 472.83 Kbp
30 1729 269.49 Kbp 1729 269.49 Kbp
40 3693 88.31 Kbp 3693 88.31 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.475x 10111 1.51 Gbp 10111 1.51 Gbp
NG based on genome size 3.19 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 21 November 2023
mOryCun1.MT.20231121.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.