Phoxinus phoxinus

Eurasian minnow

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPhoPho1: GCA_949152265.1 fPhoPho1: GCA_949152275.1
ENA fPhoPho1: GCA_949152265.1 fPhoPho1: GCA_949152275.1
UCSC Genome Browser fPhoPho1: GCA_949152265.1 fPhoPho1: GCA_949152275.1

metadata.yaml (view) (edit on github)
species:
  short_name: fPhoPho
  name: Phoxinus phoxinus
  taxon_id: 58324
  common_name: Eurasian minnow
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fPhoPho1
      biosample_id: SAMEA11296539
      sex: female
  genome_size: 1124700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPhoPho1 29.33 Gbp 26.08x 102.5 GiB
Arima fPhoPho1 118.73 Gbp 105.56x 36.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.12 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPhoPho1 PacBio HiFi (.bam) 29.33 Gbp 26.08x 102.5 GiB
Arima 118.73 Gbp 105.56x 36.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.12 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 March 2023
fPhoPho1.pri.cur.20230308.fasta.gz (261.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 4.81 Mbp 2 48.54 Mbp
20 45 3.49 Mbp 4 45.16 Mbp
30 82 2.64 Mbp 7 38.98 Mbp
40 129 2.13 Mbp 9 37.20 Mbp
50 191 1.56 Mbp 13 35.61 Mbp
60 274 1.16 Mbp 16 34.38 Mbp
70 391 0.77 Mbp 19 32.77 Mbp
80 602 310.89 Kbp 23 27.72 Mbp
90 0 0
100 0 0
0.845x 1006 0.95 Gbp 125 0.95 Gbp
NG based on genome size 1.12 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 March 2023
fPhoPho1.alt.cur.20230308.fasta.gz (257.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 93 0.90 Mbp 92 0.92 Mbp
20 244 0.63 Mbp 242 0.63 Mbp
30 447 486.88 Kbp 445 487.59 Kbp
40 711 373.62 Kbp 708 375.45 Kbp
50 1059 282.92 Kbp 1055 283.29 Kbp
60 1529 200.87 Kbp 1525 201.17 Kbp
70 2240 120.42 Kbp 2234 120.72 Kbp
80 3861 34.12 Kbp 3853 34.12 Kbp
90 0 0
100 0 0
0.823x 4949 0.93 Gbp 4941 0.93 Gbp
NG based on genome size 1.12 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.