Phoxinus phoxinus
Eurasian minnow
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fPhoPho1: GCA_949152265.1 | fPhoPho1: GCA_949152275.1 |
ENA | fPhoPho1: GCA_949152265.1 | fPhoPho1: GCA_949152275.1 |
UCSC Genome Browser | fPhoPho1: GCA_949152265.1 | fPhoPho1: GCA_949152275.1 |
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | fPhoPho1 | 29.33 Gbp | 26.08x | 102.5 GiB | |
Arima | fPhoPho1 | 118.73 Gbp | 105.56x | 36.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.12 Gbp.
Last upload on 8 February 2023.
Coverage based on genome size 1.12 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fPhoPho1 | PacBio HiFi (.bam) | 29.33 Gbp | 26.08x | 102.5 GiB | |
Arima | 118.73 Gbp | 105.56x | 36.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.12 Gbp.
Last upload on 8 February 2023.
Coverage based on genome size 1.12 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 March 2023
fPhoPho1.pri.cur.20230308.fasta.gz (261.3 MiB)
Quality: not computed
Version assembly_curated from 8 March 2023
fPhoPho1.pri.cur.20230308.fasta.gz (261.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 17 | 4.81 Mbp | 2 | 48.54 Mbp |
20 | 45 | 3.49 Mbp | 4 | 45.16 Mbp |
30 | 82 | 2.64 Mbp | 7 | 38.98 Mbp |
40 | 129 | 2.13 Mbp | 9 | 37.20 Mbp |
50 | 191 | 1.56 Mbp | 13 | 35.61 Mbp |
60 | 274 | 1.16 Mbp | 16 | 34.38 Mbp |
70 | 391 | 0.77 Mbp | 19 | 32.77 Mbp |
80 | 602 | 310.89 Kbp | 23 | 27.72 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.845x | 1006 | 0.95 Gbp | 125 | 0.95 Gbp |
NG based on genome size 1.12 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 March 2023
fPhoPho1.alt.cur.20230308.fasta.gz (257.3 MiB)
Quality: not computed
Version assembly_curated from 8 March 2023
fPhoPho1.alt.cur.20230308.fasta.gz (257.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 93 | 0.90 Mbp | 92 | 0.92 Mbp |
20 | 244 | 0.63 Mbp | 242 | 0.63 Mbp |
30 | 447 | 486.88 Kbp | 445 | 487.59 Kbp |
40 | 711 | 373.62 Kbp | 708 | 375.45 Kbp |
50 | 1059 | 282.92 Kbp | 1055 | 283.29 Kbp |
60 | 1529 | 200.87 Kbp | 1525 | 201.17 Kbp |
70 | 2240 | 120.42 Kbp | 2234 | 120.72 Kbp |
80 | 3861 | 34.12 Kbp | 3853 | 34.12 Kbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.823x | 4949 | 0.93 Gbp | 4941 | 0.93 Gbp |
NG based on genome size 1.12 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.