Physeter catodon

sperm whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mPhyCat
  name: Physeter catodon
  taxon_id: 9755
  common_name: sperm whale
  order:
    name: Artiodactyla
  family:
    name: Physeteridae
  individuals:
    - short_name: mPhyCat1
      biosample_id: SAMEA114493129
      sex: male
  genome_size: 3217620000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
Arima mPhyCat1 491.94 Gbp 152.89x 129.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 10 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPhyCat1 Arima 491.94 Gbp 152.89x 129.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 10 May 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 31 December 2025
mPhyCat2.hap1.cur.20251231.fasta.gz (751.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 97.56 Mbp 2 195.61 Mbp
20 7 81.65 Mbp 4 151.80 Mbp
30 12 52.34 Mbp 6 144.62 Mbp
40 18 48.59 Mbp 8 129.72 Mbp
50 26 36.08 Mbp 11 117.28 Mbp
60 37 25.87 Mbp 14 107.73 Mbp
70 53 15.76 Mbp 17 91.20 Mbp
80 149 1.05 Mbp 21 63.37 Mbp
90 0 0
100 0 0
0.866x 1140 2.79 Gbp 783 2.79 Gbp
NG based on genome size 3.22 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 31 December 2025
mPhyCat2.hap2.cur.20251231.fasta.gz (696.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 110.93 Mbp 2 198.00 Mbp
20 7 60.33 Mbp 4 153.21 Mbp
30 13 53.04 Mbp 6 137.80 Mbp
40 19 44.47 Mbp 9 118.11 Mbp
50 28 33.34 Mbp 11 111.76 Mbp
60 39 23.84 Mbp 14 98.45 Mbp
70 59 7.31 Mbp 18 82.80 Mbp
80 0 0
90 0 0
100 0 0
0.790x 1039 2.54 Gbp 668 2.54 Gbp
NG based on genome size 3.22 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.