Pluvialis apricaria

European golden plover

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bPluApr1: GCA_017639485.1 bPluApr1: GCA_017639475.1
ENA bPluApr1: GCA_017639485.1 bPluApr1: GCA_017639475.1
UCSC Genome Browser bPluApr1: GCA_017639485.1 bPluApr1: GCA_017639475.1

metadata.yaml (view) (edit on github)
species:
  common_name: European golden plover
  family:
    name: Charadriidae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: bPluApr1
  name: Pluvialis apricaria
  order:
    name: Charadriiformes
  short_name: bPluApr
  taxon_id: 670352
  project: [ vgp ]
CC BY 2.0 Ómar Runólfsson (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bPluApr1 98.35 Gbp 98.35x 175.5 GiB
10x bPluApr1 99.38 Gbp 99.38x 50.3 GiB
Bionano bPluApr1 N/A 473.49x 801.3 MiB
Arima bPluApr1 86.82 Gbp 86.82x 48.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 4 March 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPluApr1 PacBio CLR 98.35 Gbp 98.35x 175.5 GiB
10x 99.38 Gbp 99.38x 50.3 GiB
Bionano N/A 473.49x 801.3 MiB
Arima 86.82 Gbp 86.82x 48.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 4 March 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 July 2020
bPluApr1.pri.cur.20200728.fasta.gz (363.1 MiB)

Quality: 105.5 errors/Mb (QV=39.77)

Contigs Scaffolds
NG LG Len LG Len
10 1 53.74 Mbp 0 222.69 Mbp
20 3 33.19 Mbp 0 222.69 Mbp
30 7 26.50 Mbp 1 170.65 Mbp
40 11 23.37 Mbp 2 130.37 Mbp
50 16 19.96 Mbp 2 130.37 Mbp
60 21 16.73 Mbp 3 87.94 Mbp
70 28 13.66 Mbp 5 82.58 Mbp
80 35 11.85 Mbp 6 73.76 Mbp
90 46 7.26 Mbp 8 32.00 Mbp
100 62 5.29 Mbp 11 25.54 Mbp
1.235x 374 1.24 Gbp 106 1.25 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 July 2020
bPluApr1.alt.cur.20200728.fasta.gz (320.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 6.54 Mbp 12 6.54 Mbp
20 29 5.08 Mbp 29 5.08 Mbp
30 51 3.79 Mbp 51 3.79 Mbp
40 80 3.09 Mbp 80 3.09 Mbp
50 116 2.55 Mbp 116 2.55 Mbp
60 159 2.09 Mbp 159 2.09 Mbp
70 212 1.71 Mbp 212 1.71 Mbp
80 282 1.21 Mbp 282 1.21 Mbp
90 378 0.85 Mbp 378 0.85 Mbp
100 540 443.27 Kbp 540 443.27 Kbp
1.086x 1152 1.09 Gbp 1147 1.09 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 December 2019
bPluApr1.MT.20191205.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.