Pogoniulus pusillus

Red-fronted tinkerbird

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bPogPus1: GCA_015220805.1 bPogPus1: GCA_015220175.1
ENA bPogPus1: GCA_015220805.1 bPogPus1: GCA_015220175.1
UCSC Genome Browser bPogPus1: GCA_015220805.1 bPogPus1: GCA_015220175.1

metadata.yaml (view) (edit on github)
species:
  common_name: Red-fronted tinkerbird
  family:
    name: Lybiidae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: bPogPus1
  name: Pogoniulus pusillus
  order:
    name: Piciformes
  short_name: bPogPus
  taxon_id: 488313
  project: [ vgp ]
CC BY-SA 4.0 Alan Manson (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bPogPus1 165.64 Gbp 165.64x 292.7 GiB
10x bPogPus1 107.86 Gbp 107.86x 54.5 GiB
Bionano bPogPus1 N/A 597.46x 1.1 GiB
Arima bPogPus1 79.25 Gbp 79.25x 44.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 23 January 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPogPus1 PacBio CLR 165.64 Gbp 165.64x 292.7 GiB
10x 107.86 Gbp 107.86x 54.5 GiB
Bionano N/A 597.46x 1.1 GiB
Arima 79.25 Gbp 79.25x 44.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 23 January 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 May 2020
bPogPus1.pri.cur.20200514.fasta.gz (359.5 MiB)

Quality: 52.9 errors/Mb (QV=42.76)

Contigs Scaffolds
NG LG Len LG Len
10 2 40.39 Mbp 0 117.91 Mbp
20 5 30.97 Mbp 2 50.46 Mbp
30 8 28.01 Mbp 4 49.02 Mbp
40 12 21.81 Mbp 6 48.03 Mbp
50 17 20.64 Mbp 8 41.51 Mbp
60 22 18.25 Mbp 11 34.65 Mbp
70 28 15.34 Mbp 14 32.53 Mbp
80 35 11.60 Mbp 18 25.07 Mbp
90 45 9.21 Mbp 22 23.07 Mbp
100 58 6.30 Mbp 26 20.83 Mbp
1.266x 559 1.27 Gbp 252 1.27 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 May 2020
bPogPus1.alt.cur.20200514.fasta.gz (315.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 39 1.96 Mbp 39 1.96 Mbp
20 100 1.41 Mbp 100 1.41 Mbp
30 181 1.10 Mbp 181 1.10 Mbp
40 283 0.87 Mbp 283 0.87 Mbp
50 411 0.71 Mbp 411 0.71 Mbp
60 565 0.59 Mbp 565 0.59 Mbp
70 751 486.38 Kbp 751 486.70 Kbp
80 979 395.13 Kbp 979 395.13 Kbp
90 1270 298.30 Kbp 1269 299.22 Kbp
100 1683 192.36 Kbp 1682 192.76 Kbp
1.102x 2760 1.10 Gbp 2748 1.10 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 24 January 2020
bPogPus1.MT.20200124.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.