Pseudophryne corroboree
corroboree frog
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | aPseCor3: GCA_028390025.1 aPseCor3: GCA_028390055.1 | |
ENA | aPseCor3: GCA_028390025.1 aPseCor3: GCA_028390055.1 | |
UCSC Genome Browser | aPseCor3: GCA_028390025.1 aPseCor3: GCA_028390055.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Andrew c (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 8.56 Gbp.
Last upload on 14 March 2023.
Coverage based on genome size 8.56 Gbp.
Last upload on 14 March 2023.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 8.56 Gbp.
Last upload on 14 March 2023.
Coverage based on genome size 8.56 Gbp.
Last upload on 14 March 2023.
Assemblies
Individual 3 Primary Assembly
No assembly available.
No assembly available.
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | - | - | - | - |
20 | - | - | - | - |
30 | - | - | - | - |
40 | - | - | - | - |
50 | - | - | - | - |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.000x | - | 0.0 Mbp | - | 0.0 Mbp |
Individual 3 Alternate Assembly
Version assembly_curated from 17 December 2022
aPseCor3.alt.cur.20221217.fasta.gz (158.3 KiB)
Quality: not computed
Version assembly_curated from 17 December 2022
aPseCor3.alt.cur.20221217.fasta.gz (158.3 KiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 0 | 0 | ||
20 | 0 | 0 | ||
30 | 0 | 0 | ||
40 | 0 | 0 | ||
50 | 0 | 0 | ||
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.000x | 1 | 0.54 Mbp | 1 | 0.54 Mbp |
NG based on genome size 8.56 Gbp.
Individual 3 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 6 August 2022
aPseCor3.HiC.hap1.20220806.fasta.gz (2.3 GiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 6 August 2022
aPseCor3.HiC.hap1.20220806.fasta.gz (2.3 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 31 | 22.87 Mbp | 1 | 1.22 Gbp |
20 | 77 | 15.59 Mbp | 2 | 1.04 Gbp |
30 | 141 | 11.71 Mbp | 3 | 0.93 Gbp |
40 | 224 | 9.09 Mbp | 4 | 0.82 Gbp |
50 | 330 | 7.19 Mbp | 5 | 0.68 Gbp |
60 | 467 | 5.40 Mbp | 6 | 0.66 Gbp |
70 | 655 | 3.87 Mbp | 8 | 466.06 Mbp |
80 | 927 | 2.52 Mbp | 11 | 206.57 Mbp |
90 | 1386 | 1.36 Mbp | 16 | 76.73 Mbp |
100 | 2557 | 361.00 Kbp | 424 | 0.59 Mbp |
1.043x | 5957 | 8.93 Gbp | 3526 | 8.95 Gbp |
NG based on genome size 8.56 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 17 December 2022
aPseCor3.hap2.cur.20221217.fasta.gz (2.3 GiB)
Quality: not computed
Version assembly_curated from 17 December 2022
aPseCor3.hap2.cur.20221217.fasta.gz (2.3 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 28 | 22.40 Mbp | 0 | 1.25 Gbp |
20 | 75 | 15.29 Mbp | 1 | 1.06 Gbp |
30 | 141 | 11.59 Mbp | 2 | 0.95 Gbp |
40 | 224 | 9.09 Mbp | 3 | 0.85 Gbp |
50 | 330 | 7.10 Mbp | 4 | 0.85 Gbp |
60 | 469 | 5.22 Mbp | 5 | 0.81 Gbp |
70 | 670 | 3.60 Mbp | 6 | 0.52 Gbp |
80 | 964 | 2.31 Mbp | 8 | 483.89 Mbp |
90 | 1474 | 1.18 Mbp | 10 | 366.57 Mbp |
100 | 2906 | 268.00 Kbp | 408 | 412.31 Kbp |
1.034x | 5826 | 8.85 Gbp | 3127 | 8.87 Gbp |
NG based on genome size 8.56 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.