Rattus norvegicus
Norway rat
Included in the VGP and T2T.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY-SA 2.0, Jean-Jacques Boujot (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 2.90 Gbp.
Last upload on 8 March 2024.
Coverage based on genome size 2.90 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 2.90 Gbp.
Last upload on 8 March 2024.
Coverage based on genome size 2.90 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 September 2020
mRatNor1.pri.cur.20200911.fasta.gz (770.4 MiB)
Quality: 38.6 errors/Mb (QV=44.13)
Version assembly_curated from 11 September 2020
mRatNor1.pri.cur.20200911.fasta.gz (770.4 MiB)
Quality: 38.6 errors/Mb (QV=44.13)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 66.39 Mbp | 1 | 249.05 Mbp |
20 | 7 | 60.87 Mbp | 2 | 182.69 Mbp |
30 | 12 | 47.25 Mbp | 3 | 169.03 Mbp |
40 | 17 | 39.90 Mbp | 5 | 152.45 Mbp |
50 | 26 | 29.20 Mbp | 7 | 135.01 Mbp |
60 | 35 | 23.71 Mbp | 9 | 114.18 Mbp |
70 | 49 | 16.15 Mbp | 11 | 106.81 Mbp |
80 | 71 | 9.60 Mbp | 14 | 86.53 Mbp |
90 | 114 | 3.78 Mbp | 17 | 83.83 Mbp |
100 | 755 | 136 bp | 174 | 746 bp |
1.000x | 756 | 2.63 Gbp | 175 | 2.65 Gbp |
NG based on genome size 2.90 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 September 2020
mRatNor1.alt.cur.20200911.fasta.gz (83.8 MiB)
Quality: not computed
Version assembly_curated from 11 September 2020
mRatNor1.alt.cur.20200911.fasta.gz (83.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 139 | 154.00 Kbp | 139 | 154.00 Kbp |
20 | 347 | 127.76 Kbp | 347 | 127.81 Kbp |
30 | 584 | 116.36 Kbp | 583 | 116.47 Kbp |
40 | 840 | 107.48 Kbp | 840 | 107.52 Kbp |
50 | 1117 | 100.34 Kbp | 1116 | 100.35 Kbp |
60 | 1413 | 93.70 Kbp | 1412 | 93.72 Kbp |
70 | 1731 | 86.65 Kbp | 1731 | 86.67 Kbp |
80 | 2081 | 77.16 Kbp | 2080 | 77.20 Kbp |
90 | 2485 | 64.17 Kbp | 2483 | 64.31 Kbp |
100 | 3161 | 1.53 Kbp | 3155 | 1.53 Kbp |
1.000x | 3162 | 286.93 Mbp | 3156 | 286.93 Mbp |
NG based on genome size 2.90 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
mRatNor1.MT.20191204.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 4 December 2019
mRatNor1.MT.20191204.fasta.gz (4.9 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.