Rhinatrema bivittatum
two-lined caecilian
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | aRhiBiv1: GCA_901001135.2 | aRhiBiv1: GCA_901001175.1 |
ENA | aRhiBiv1: GCA_901001135.2 | aRhiBiv1: GCA_901001175.1 |
UCSC Genome Browser | aRhiBiv1: GCA_901001135.2 | aRhiBiv1: GCA_901001175.1 |
metadata.yaml (view) (edit on github) |
---|
Copyright Stuart V Nielsen, used with permission
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 5.07 Gbp.
Last upload on 1 May 2018.
Coverage based on genome size 5.07 Gbp.
Last upload on 1 May 2018.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
aRhiBiv1 | PacBio CLR | 232.06 Gbp | 45.79x | 415.7 GiB | |
10x | 367.47 Gbp | 72.51x | 250.4 GiB | ||
Bionano | N/A | 359.44x | 1.5 GiB | ||
Arima | 367.47 Gbp | 72.51x | 222.5 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 5.07 Gbp.
Last upload on 1 May 2018.
Coverage based on genome size 5.07 Gbp.
Last upload on 1 May 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 April 2019
aRhiBiv1.pri.cur.20190409.fasta.gz (1.5 GiB)
Quality: 152.0 errors/Mb (QV=38.18)
Version assembly_curated from 9 April 2019
aRhiBiv1.pri.cur.20190409.fasta.gz (1.5 GiB)
Quality: 152.0 errors/Mb (QV=38.18)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 48 | 8.64 Mbp | 0 | 0.84 Gbp |
20 | 117 | 6.48 Mbp | 1 | 0.83 Gbp |
30 | 206 | 5.07 Mbp | 1 | 0.83 Gbp |
40 | 318 | 4.08 Mbp | 2 | 0.60 Gbp |
50 | 455 | 3.35 Mbp | 3 | 486.88 Mbp |
60 | 623 | 2.70 Mbp | 4 | 387.03 Mbp |
70 | 838 | 2.05 Mbp | 6 | 313.51 Mbp |
80 | 1128 | 1.49 Mbp | 7 | 277.53 Mbp |
90 | 1560 | 0.89 Mbp | 10 | 103.41 Mbp |
100 | 2556 | 254.22 Kbp | 16 | 63.94 Mbp |
1.043x | 4902 | 5.29 Gbp | 1329 | 5.32 Gbp |
NG based on genome size 5.07 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 April 2019
aRhiBiv1.alt.cur.20190409.fasta.gz (1.3 GiB)
Quality: not computed
Version assembly_curated from 9 April 2019
aRhiBiv1.alt.cur.20190409.fasta.gz (1.3 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 545 | 0.72 Mbp | 545 | 0.72 Mbp |
20 | 1391 | 0.51 Mbp | 1391 | 0.51 Mbp |
30 | 2523 | 392.37 Kbp | 2523 | 392.37 Kbp |
40 | 4006 | 299.18 Kbp | 4006 | 299.18 Kbp |
50 | 5940 | 231.02 Kbp | 5940 | 231.02 Kbp |
60 | 8452 | 176.28 Kbp | 8452 | 176.28 Kbp |
70 | 11779 | 131.49 Kbp | 11779 | 131.49 Kbp |
80 | 16417 | 89.74 Kbp | 16417 | 89.74 Kbp |
90 | 24732 | 32.97 Kbp | 24732 | 32.97 Kbp |
100 | 0 | 0 | ||
0.911x | 27233 | 4.62 Gbp | 27231 | 4.62 Gbp |
NG based on genome size 5.07 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aRhiBiv1.MT.20191003.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 3 October 2019
aRhiBiv1.MT.20191003.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.