Rhinolophus ferrumequinum

greater horseshoe bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mRhiFer1: GCA_014108255.1
ENA mRhiFer1: GCA_014108255.1
UCSC Genome Browser mRhiFer1: GCA_014108255.1

metadata.yaml (view) (edit on github)
species:
  short_name: mRhiFer
  name: Rhinolophus ferrumequinum
  taxon_id: 59479
  common_name: greater horseshoe bat
  order:
    name: Chiroptera
  family:
    name: Rhinolophidae
  individuals:
    - short_name: mRhiFer1
    - short_name: mRhiFer2
  genome_size: 2369916842
  genome_size_method:
  project: [ vgp , bat1k ]
CC BY-NC-SA 2.0 Ján Svetlík (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mRhiFer1 152.50 Gbp 64.35x 271.0 GiB
10x mRhiFer1 106.85 Gbp 45.08x 64.1 GiB
Bionano mRhiFer1 N/A 672.14x 2.2 GiB
Phase mRhiFer1 44.79 Gbp 18.90x 28.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.37 Gbp.
Last upload on 3 April 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRhiFer1 PacBio CLR 152.50 Gbp 64.35x 271.0 GiB
10x 106.85 Gbp 45.08x 64.1 GiB
Bionano N/A 672.14x 2.2 GiB
Phase 44.79 Gbp 18.90x 28.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.37 Gbp.
Last upload on 3 April 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 7 September 2018
mRhiFer1.pri.cur.20180907.fasta.gz (606.7 MiB)

Quality: 7.1 errors/Mb (QV=51.51)

Contigs Scaffolds
NG LG Len LG Len
10 3 59.75 Mbp 2 106.21 Mbp
20 7 51.12 Mbp 4 101.15 Mbp
30 12 40.32 Mbp 6 97.57 Mbp
40 19 32.48 Mbp 9 89.12 Mbp
50 27 25.18 Mbp 11 83.96 Mbp
60 39 16.72 Mbp 15 66.94 Mbp
70 56 10.68 Mbp 19 55.57 Mbp
80 85 5.27 Mbp 23 44.82 Mbp
90 0 0
100 0 0
0.873x 292 2.07 Gbp 134 2.08 Gbp
NG based on genome size 2.37 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 7 September 2018
mRhiFer1.alt.cur.20180907.fasta.gz (453.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 242 0.71 Mbp 242 0.71 Mbp
20 648 484.49 Kbp 648 484.49 Kbp
30 1250 326.48 Kbp 1250 326.48 Kbp
40 2162 204.80 Kbp 2162 204.80 Kbp
50 3838 90.10 Kbp 3838 90.18 Kbp
60 9121 29.05 Kbp 9119 29.05 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.639x 13426 1.51 Gbp 13424 1.51 Gbp
NG based on genome size 2.37 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mRhiFer1.MT.20191003.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.