Rhinolophus hipposideros

lesser horseshoe bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mRhiHip
  name: Rhinolophus hipposideros
  taxon_id: 77218
  common_name: lesser horseshoe bat
  order:
    name: Chiroptera
  family:
    name: Rhinolophidae
  individuals:
    - short_name: mRhiHip2
      biosample_id: SAMEA113980802
      sex: female
  genome_size: 1877760000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mRhiHip2 82.74 Gbp 44.06x 28.2 GiB
Arima mRhiHip2 159.69 Gbp 85.04x 44.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.88 Gbp.
Last upload on 1 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mRhiHip2 PacBio HiFi (.bam) 82.74 Gbp 44.06x 28.2 GiB
Arima 159.69 Gbp 85.04x 44.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.88 Gbp.
Last upload on 1 May 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 21 June 2024
mRhiHip2.hap1.cur.20240621.fasta.gz (624.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 30 4.90 Mbp 2 111.16 Mbp
20 73 3.86 Mbp 4 109.18 Mbp
30 127 3.17 Mbp 5 107.82 Mbp
40 191 2.71 Mbp 7 101.43 Mbp
50 267 2.27 Mbp 9 95.59 Mbp
60 357 1.93 Mbp 11 88.36 Mbp
70 463 1.63 Mbp 14 75.91 Mbp
80 589 1.33 Mbp 16 68.18 Mbp
90 747 1.05 Mbp 19 58.31 Mbp
100 963 0.71 Mbp 23 45.73 Mbp
1.156x 2350 2.17 Gbp 723 2.17 Gbp
NG based on genome size 1.88 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 21 June 2024
mRhiHip2.hap2.cur.20240621.fasta.gz (632.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 29 5.03 Mbp 2 111.15 Mbp
20 73 3.79 Mbp 4 109.05 Mbp
30 126 3.22 Mbp 6 102.05 Mbp
40 190 2.70 Mbp 7 101.46 Mbp
50 266 2.29 Mbp 9 96.23 Mbp
60 355 1.91 Mbp 11 89.09 Mbp
70 463 1.61 Mbp 14 75.85 Mbp
80 592 1.31 Mbp 16 67.18 Mbp
90 751 1.04 Mbp 19 58.58 Mbp
100 965 0.74 Mbp 23 45.94 Mbp
1.193x 2727 2.24 Gbp 1079 2.24 Gbp
NG based on genome size 1.88 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 May 2024
mRhiHip2.MT.20240502.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.