Salarias fasciatus

jewelled blenny

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fSalaFa1: GCA_902148845.1 fSalaFa1: GCA_902148835.1
ENA fSalaFa1: GCA_902148845.1 fSalaFa1: GCA_902148835.1
UCSC Genome Browser fSalaFa1: GCA_902148845.1 fSalaFa1: GCA_902148835.1

metadata.yaml (view) (edit on github)
species:
  short_name: fSalaFa
  name: Salarias fasciatus
  taxon_id: 181472
  common_name: jewelled blenny
  order:
    name: Blenniiformes
  family:
    name: Blenniidae
  individuals:
    - short_name: fSalaFa1
      biosample_id: SAMEA4966329
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
(pixabay)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fSalaFa1 65.36 Gbp 81.95x 113.8 GiB
10x fSalaFa1 128.31 Gbp 160.89x 79.2 GiB
Bionano fSalaFa1 N/A 1348.74x 1.1 GiB
Dovetail Genomics fSalaFa1 118.79 Gbp 148.95x 78.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 5 April 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSalaFa1 PacBio CLR 65.36 Gbp 81.95x 113.8 GiB
10x 128.31 Gbp 160.89x 79.2 GiB
Bionano N/A 1348.74x 1.1 GiB
Dovetail Genomics 118.79 Gbp 148.95x 78.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 5 April 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 June 2019
fSalaFa1.pri.cur.20190624.fasta.gz (227.2 MiB)

Quality: 201.8 errors/Mb (QV=36.95)

Contigs Scaffolds
NG LG Len LG Len
10 7 8.04 Mbp 1 41.30 Mbp
20 19 5.50 Mbp 3 41.01 Mbp
30 36 4.16 Mbp 6 35.75 Mbp
40 57 3.32 Mbp 8 34.15 Mbp
50 85 2.60 Mbp 10 32.73 Mbp
60 119 2.03 Mbp 13 30.60 Mbp
70 164 1.51 Mbp 15 29.90 Mbp
80 225 1.08 Mbp 18 27.17 Mbp
90 331 0.52 Mbp 21 22.43 Mbp
100 803 806 bp 201 3.08 Kbp
1.000x 804 0.79 Gbp 202 0.80 Gbp
NG based on genome size 0.80 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 June 2019
fSalaFa1.alt.cur.20190624.fasta.gz (256.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 1.27 Mbp 48 1.30 Mbp
20 137 0.86 Mbp 135 0.87 Mbp
30 260 0.64 Mbp 257 0.64 Mbp
40 418 0.51 Mbp 414 0.51 Mbp
50 609 421.53 Kbp 605 424.59 Kbp
60 848 324.06 Kbp 842 326.98 Kbp
70 1166 238.76 Kbp 1160 240.72 Kbp
80 1639 147.67 Kbp 1631 148.43 Kbp
90 2480 78.06 Kbp 2471 78.45 Kbp
100 4524 159 bp 4515 159 bp
1.000x 4525 0.89 Gbp 4516 0.89 Gbp
NG based on genome size 0.80 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.