Salmo trutta
brown trout
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fSalTru1: GCA_901001165.2 | |
ENA | fSalTru1: GCA_901001165.2 | |
UCSC Genome Browser | fSalTru1: GCA_901001165.2 |
metadata.yaml (view) (edit on github) |
---|
public domain
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 2.37 Gbp.
Last upload on 4 May 2022.
Coverage based on genome size 2.37 Gbp.
Last upload on 4 May 2022.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 2.37 Gbp.
Last upload on 4 May 2022.
Coverage based on genome size 2.37 Gbp.
Last upload on 4 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 April 2019
fSalTru1.pri.cur.20190403.fasta.gz (623.9 MiB)
Quality: 99.0 errors/Mb (QV=40.04)
Version assembly_curated from 3 April 2019
fSalTru1.pri.cur.20190403.fasta.gz (623.9 MiB)
Quality: 99.0 errors/Mb (QV=40.04)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 22 | 7.53 Mbp | 2 | 86.25 Mbp |
20 | 59 | 5.36 Mbp | 5 | 74.75 Mbp |
30 | 112 | 3.65 Mbp | 8 | 66.90 Mbp |
40 | 186 | 2.66 Mbp | 12 | 59.76 Mbp |
50 | 294 | 1.69 Mbp | 17 | 52.21 Mbp |
60 | 464 | 1.07 Mbp | 21 | 49.36 Mbp |
70 | 740 | 0.65 Mbp | 26 | 46.38 Mbp |
80 | 1197 | 384.60 Kbp | 31 | 44.89 Mbp |
90 | 2068 | 177.55 Kbp | 38 | 25.48 Mbp |
100 | 5380 | 1 bp | 1439 | 6.00 Kbp |
1.000x | 5381 | 2.30 Gbp | 1440 | 2.37 Gbp |
NG based on genome size 2.37 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 16 October 2018
fSalTru1.alt.asm.20181016.fasta.gz (54.7 MiB)
Quality: not computed
Version assembly_cambridge from 16 October 2018
fSalTru1.alt.asm.20181016.fasta.gz (54.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 184 | 82.68 Kbp | 184 | 82.68 Kbp |
20 | 434 | 70.31 Kbp | 434 | 70.31 Kbp |
30 | 720 | 63.17 Kbp | 720 | 63.17 Kbp |
40 | 1035 | 57.51 Kbp | 1035 | 57.51 Kbp |
50 | 1379 | 53.13 Kbp | 1379 | 53.13 Kbp |
60 | 1751 | 48.87 Kbp | 1751 | 48.87 Kbp |
70 | 2161 | 43.87 Kbp | 2161 | 43.87 Kbp |
80 | 2624 | 37.88 Kbp | 2624 | 37.88 Kbp |
90 | 3183 | 29.83 Kbp | 3183 | 29.83 Kbp |
100 | 4193 | 164 bp | 4193 | 164 bp |
1.000x | 4194 | 189.98 Mbp | 4194 | 189.98 Mbp |
NG based on genome size 2.37 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fSalTru1.MT.20191003.fasta.gz (5.1 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 3 October 2019
fSalTru1.MT.20191003.fasta.gz (5.1 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.