Sciurus carolinensis
grey squirrel
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mSciCar1: GCA_902686445.2 | mSciCar1: GCA_902685475.1 |
ENA | mSciCar1: GCA_902686445.2 | mSciCar1: GCA_902685475.1 |
UCSC Genome Browser | mSciCar1: GCA_902686445.2 | mSciCar1: GCA_902685475.1 |
metadata.yaml (view) (edit on github) |
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CC BY 2.0, Judy Gallagher (flickr)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio CLR | mSciCar1 | 222.76 Gbp | 79.12x | 381.9 GiB | |
10x | mSciCar1 | 270.69 Gbp | 96.14x | 167.2 GiB | |
Dovetail Genomics | mSciCar1 | 370.23 Gbp | 131.50x | 237.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.82 Gbp.
Last upload on 8 August 2019.
Coverage based on genome size 2.82 Gbp.
Last upload on 8 August 2019.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mSciCar1 | PacBio CLR | 222.76 Gbp | 79.12x | 381.9 GiB | |
10x | 270.69 Gbp | 96.14x | 167.2 GiB | ||
Dovetail Genomics | 370.23 Gbp | 131.50x | 237.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.82 Gbp.
Last upload on 8 August 2019.
Coverage based on genome size 2.82 Gbp.
Last upload on 8 August 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 November 2019
mSciCar1.pri.cur.20191114.fasta.gz (818.7 MiB)
Quality: 128.4 errors/Mb (QV=38.91)
Version assembly_curated from 14 November 2019
mSciCar1.pri.cur.20191114.fasta.gz (818.7 MiB)
Quality: 128.4 errors/Mb (QV=38.91)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 5 | 44.40 Mbp | 1 | 199.83 Mbp |
20 | 12 | 35.14 Mbp | 2 | 183.55 Mbp |
30 | 22 | 25.19 Mbp | 4 | 175.91 Mbp |
40 | 34 | 20.21 Mbp | 6 | 154.99 Mbp |
50 | 51 | 13.98 Mbp | 7 | 148.23 Mbp |
60 | 74 | 10.81 Mbp | 9 | 140.98 Mbp |
70 | 106 | 6.73 Mbp | 12 | 118.65 Mbp |
80 | 170 | 2.83 Mbp | 14 | 88.65 Mbp |
90 | 423 | 479.98 Kbp | 19 | 30.99 Mbp |
100 | 2575 | 3.80 Kbp | 751 | 10.39 Kbp |
1.000x | 2576 | 2.81 Gbp | 752 | 2.82 Gbp |
NG based on genome size 2.82 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 November 2019
mSciCar1.alt.cur.20191114.fasta.gz (599.5 MiB)
Quality: not computed
Version assembly_curated from 14 November 2019
mSciCar1.alt.cur.20191114.fasta.gz (599.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 100 | 1.58 Mbp | 100 | 1.58 Mbp |
20 | 253 | 1.15 Mbp | 253 | 1.15 Mbp |
30 | 455 | 0.88 Mbp | 455 | 0.88 Mbp |
40 | 725 | 0.66 Mbp | 725 | 0.66 Mbp |
50 | 1081 | 492.51 Kbp | 1081 | 492.51 Kbp |
60 | 1579 | 349.54 Kbp | 1579 | 349.58 Kbp |
70 | 2328 | 218.26 Kbp | 2328 | 218.33 Kbp |
80 | 3509 | 140.64 Kbp | 3508 | 140.64 Kbp |
90 | 5377 | 85.88 Kbp | 5376 | 85.91 Kbp |
100 | 9509 | 1.04 Kbp | 9507 | 1.04 Kbp |
1.000x | 9510 | 2.06 Gbp | 9508 | 2.06 Gbp |
NG based on genome size 2.82 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
mSciCar1.MT.20191216.fasta.gz (4.9 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 16 December 2019
mSciCar1.MT.20191216.fasta.gz (4.9 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.