Sciurus vulgaris

Eurasian red squirrel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mSciVul1: GCA_902686455.2 mSciVul1: GCA_902685485.1
ENA mSciVul1: GCA_902686455.2 mSciVul1: GCA_902685485.1
UCSC Genome Browser mSciVul1: GCA_902686455.2 mSciVul1: GCA_902685485.1

metadata.yaml (view) (edit on github)
species:
  short_name: mSciVul
  name: Sciurus vulgaris
  taxon_id: 55149
  common_name: Eurasian red squirrel
  order:
    name: Rodentia
  family:
    name: Sciuridae
  individuals:
    - short_name: mSciVul1
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 RedR (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mSciVul1 207.32 Gbp 72.02x 363.2 GiB
10x mSciVul1 221.64 Gbp 76.99x 148.5 GiB
Bionano mSciVul1 N/A 184.05x 0.9 GiB
Arima mSciVul1 46.84 Gbp 16.27x 24.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 4 June 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mSciVul1 PacBio CLR 207.32 Gbp 72.02x 363.2 GiB
10x 221.64 Gbp 76.99x 148.5 GiB
Bionano N/A 184.05x 0.9 GiB
Arima 46.84 Gbp 16.27x 24.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 4 June 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 27 October 2019
mSciVul1.pri.cur.20191027.fasta.gz (791.3 MiB)

Quality: 176.9 errors/Mb (QV=37.52)

Contigs Scaffolds
NG LG Len LG Len
10 5 39.64 Mbp 1 204.37 Mbp
20 13 31.67 Mbp 2 189.66 Mbp
30 23 24.28 Mbp 4 181.67 Mbp
40 35 20.26 Mbp 6 162.82 Mbp
50 50 16.33 Mbp 7 153.87 Mbp
60 68 13.09 Mbp 9 145.29 Mbp
70 93 8.73 Mbp 11 132.26 Mbp
80 134 4.83 Mbp 14 99.24 Mbp
90 233 1.55 Mbp 18 41.58 Mbp
100 1814 1 bp 637 659 bp
1.000x 1815 2.72 Gbp 638 2.88 Gbp
NG based on genome size 2.88 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 27 October 2019
mSciVul1.alt.cur.20191027.fasta.gz (398.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 192 0.54 Mbp 192 0.54 Mbp
20 494 389.36 Kbp 494 389.36 Kbp
30 892 305.10 Kbp 892 305.10 Kbp
40 1399 241.66 Kbp 1399 241.66 Kbp
50 2032 192.95 Kbp 2032 193.05 Kbp
60 2828 151.60 Kbp 2827 151.79 Kbp
70 3854 116.90 Kbp 3853 116.95 Kbp
80 5208 85.99 Kbp 5206 86.00 Kbp
90 7126 58.84 Kbp 7124 58.84 Kbp
100 10656 101 bp 10654 101 bp
1.000x 10657 1.37 Gbp 10655 1.37 Gbp
NG based on genome size 2.88 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mSciVul1.MT.20191003.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.