Scleropages formosus

golden arowana

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fSclFor1: GCA_900964775.1 fSclFor1: GCA_900964985.2
ENA fSclFor1: GCA_900964775.1 fSclFor1: GCA_900964985.2
UCSC Genome Browser fSclFor1: GCA_900964775.1 fSclFor1: GCA_900964985.2

metadata.yaml (view) (edit on github)
species:
  short_name: fSclFor
  name: Scleropages formosus
  taxon_id: 113540
  common_name: golden arowana
  order:
    name: Osteoglossiformes
  family:
    name: Osteoglossidae
  individuals:
    - short_name: fSclFor1
      biosample_id: SAMEA4872123
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.5 Okinawa Churaumi Aquarium (opencage)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fSclFor1 57.25 Gbp 72.98x 98.1 GiB
10x fSclFor1 133.07 Gbp 169.62x 80.2 GiB
Bionano fSclFor1 N/A 93.42x 121.5 MiB
Arima fSclFor1 139.71 Gbp 178.08x 85.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 January 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSclFor1 PacBio CLR 57.25 Gbp 72.98x 98.1 GiB
10x 133.07 Gbp 169.62x 80.2 GiB
Bionano N/A 93.42x 121.5 MiB
Arima 139.71 Gbp 178.08x 85.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 January 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fSclFor1.pri.cur.20190401.fasta.gz (230.5 MiB)

Quality: 26.7 errors/Mb (QV=45.73)

Contigs Scaffolds
NG LG Len LG Len
10 3 19.33 Mbp 1 43.58 Mbp
20 8 13.98 Mbp 3 39.06 Mbp
30 14 11.90 Mbp 5 38.29 Mbp
40 22 9.87 Mbp 7 32.82 Mbp
50 30 9.10 Mbp 10 31.08 Mbp
60 39 7.19 Mbp 12 29.67 Mbp
70 52 5.14 Mbp 15 27.32 Mbp
80 69 3.96 Mbp 18 25.98 Mbp
90 93 2.68 Mbp 21 24.52 Mbp
100 215 2.02 Kbp 70 23.59 Kbp
1.000x 216 0.78 Gbp 71 0.78 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fSclFor1.alt.cur.20190401.fasta.gz (223.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 29 2.09 Mbp 29 2.09 Mbp
20 71 1.49 Mbp 71 1.49 Mbp
30 130 1.13 Mbp 130 1.13 Mbp
40 206 0.86 Mbp 206 0.86 Mbp
50 306 0.66 Mbp 306 0.66 Mbp
60 435 0.52 Mbp 435 0.52 Mbp
70 602 392.44 Kbp 602 394.19 Kbp
80 832 271.30 Kbp 832 271.30 Kbp
90 1174 176.98 Kbp 1173 176.99 Kbp
100 2006 147 bp 2005 147 bp
1.000x 2007 0.75 Gbp 2006 0.75 Gbp
NG based on genome size 0.78 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.