Scyliorhinus canicula

lesser-spotted catshark

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank sScyCan1: GCA_902713615.2 sScyCan1: GCA_902713625.2
ENA sScyCan1: GCA_902713615.2 sScyCan1: GCA_902713625.2
UCSC Genome Browser sScyCan1: GCA_902713615.2 sScyCan1: GCA_902713625.2

metadata.yaml (view) (edit on github)
species:
  short_name: sScyCan
  name: Scyliorhinus canicula
  taxon_id: 7830
  common_name: lesser-spotted catshark
  order:
    name: Carcharhiniformes
  family:
    name: Scyliorhinidae
  individuals:
    - short_name: sScyCan1
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 4.0 Hans Hillewaert (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR sScyCan1 335.74 Gbp 79.55x 587.7 GiB
10x sScyCan1 444.23 Gbp 105.26x 295.8 GiB
Bionano sScyCan1 N/A 359.61x 1.7 GiB
Arima sScyCan1 149.36 Gbp 35.39x 99.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.22 Gbp.
Last upload on 17 December 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sScyCan1 PacBio CLR 335.74 Gbp 79.55x 587.7 GiB
10x 444.23 Gbp 105.26x 295.8 GiB
Bionano N/A 359.61x 1.7 GiB
Arima 149.36 Gbp 35.39x 99.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.22 Gbp.
Last upload on 17 December 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 December 2019
sScyCan1.pri.cur.20191216.fasta.gz (1.2 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 53 5.68 Mbp 1 289.50 Mbp
20 144 3.89 Mbp 2 277.25 Mbp
30 263 3.10 Mbp 4 233.86 Mbp
40 417 2.39 Mbp 6 211.67 Mbp
50 615 1.86 Mbp 8 198.79 Mbp
60 875 1.38 Mbp 10 169.80 Mbp
70 1239 0.95 Mbp 13 160.85 Mbp
80 1804 0.57 Mbp 16 133.84 Mbp
90 2880 254.69 Kbp 19 98.27 Mbp
100 7790 31 bp 644 995 bp
1.000x 7791 4.16 Gbp 645 4.22 Gbp
NG based on genome size 4.22 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 December 2019
sScyCan1.alt.cur.20191216.fasta.gz (1.1 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 540 0.55 Mbp 540 0.55 Mbp
20 1337 435.80 Kbp 1337 435.80 Kbp
30 2336 346.05 Kbp 2336 346.05 Kbp
40 3578 281.14 Kbp 3578 281.14 Kbp
50 5101 230.70 Kbp 5101 230.70 Kbp
60 6967 185.10 Kbp 6967 185.10 Kbp
70 9313 146.54 Kbp 9313 146.54 Kbp
80 12349 110.55 Kbp 12349 110.55 Kbp
90 16635 71.73 Kbp 16635 71.73 Kbp
100 26656 115 bp 26650 115 bp
1.000x 26657 3.87 Gbp 26651 3.87 Gbp
NG based on genome size 4.22 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.