Sparus aurata
gilthead seabream
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fSpaAur1: GCA_900880675.2 | fSpaAur1: GCA_900880695.1 |
ENA | fSpaAur1: GCA_900880675.2 | fSpaAur1: GCA_900880695.1 |
UCSC Genome Browser | fSpaAur1: GCA_900880675.2 | fSpaAur1: GCA_900880695.1 |
metadata.yaml (view) (edit on github) |
---|
CC BY 3.0 Roberto Pillon (wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio CLR | fSpaAur1 | 47.12 Gbp | 56.52x | 84.7 GiB | |
10x | fSpaAur1 | 123.08 Gbp | 147.65x | 80.3 GiB | |
Arima | fSpaAur1 | 103.19 Gbp | 123.80x | 50.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fSpaAur1 | PacBio CLR | 47.12 Gbp | 56.52x | 84.7 GiB | |
10x | 123.08 Gbp | 147.65x | 80.3 GiB | ||
Arima | 103.19 Gbp | 123.80x | 50.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.pri.cur.20190314.fasta.gz (224.8 MiB)
Quality: 63.5 errors/Mb (QV=41.97)
Version assembly_curated from 14 March 2019
fSpaAur1.pri.cur.20190314.fasta.gz (224.8 MiB)
Quality: 63.5 errors/Mb (QV=41.97)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 9.55 Mbp | 2 | 40.12 Mbp |
20 | 17 | 7.24 Mbp | 4 | 37.95 Mbp |
30 | 31 | 5.24 Mbp | 6 | 37.01 Mbp |
40 | 49 | 4.03 Mbp | 8 | 36.13 Mbp |
50 | 74 | 2.86 Mbp | 10 | 35.79 Mbp |
60 | 107 | 2.13 Mbp | 13 | 35.16 Mbp |
70 | 157 | 1.31 Mbp | 15 | 31.86 Mbp |
80 | 245 | 0.71 Mbp | 18 | 30.53 Mbp |
90 | 426 | 305.76 Kbp | 21 | 28.39 Mbp |
100 | 1224 | 2 bp | 174 | 20.81 Kbp |
1.000x | 1225 | 0.83 Gbp | 175 | 0.83 Gbp |
NG based on genome size 0.83 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.alt.cur.20190314.fasta.gz (196.1 MiB)
Quality: not computed
Version assembly_curated from 14 March 2019
fSpaAur1.alt.cur.20190314.fasta.gz (196.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 91 | 0.51 Mbp | 91 | 0.51 Mbp |
20 | 257 | 342.37 Kbp | 257 | 342.37 Kbp |
30 | 486 | 250.78 Kbp | 486 | 250.78 Kbp |
40 | 791 | 191.94 Kbp | 791 | 191.94 Kbp |
50 | 1183 | 152.71 Kbp | 1183 | 152.84 Kbp |
60 | 1685 | 117.07 Kbp | 1685 | 117.07 Kbp |
70 | 2348 | 87.70 Kbp | 2347 | 87.73 Kbp |
80 | 3239 | 64.06 Kbp | 3238 | 64.08 Kbp |
90 | 4543 | 40.95 Kbp | 4542 | 40.95 Kbp |
100 | 7240 | 125 bp | 7238 | 125 bp |
1.000x | 7241 | 0.67 Gbp | 7239 | 0.67 Gbp |
NG based on genome size 0.83 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fSpaAur1.MT.20191003.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 3 October 2019
fSpaAur1.MT.20191003.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.