Spermophilus citellus

European suslik

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mSpeCit
  name: Spermophilus citellus
  taxon_id: 9997
  common_name: European suslik
  order:
    name: Rodentia
  family:
    name: Sciuridae
  individuals:
    - short_name: mSpeCit2
      biosample_id: SAMEA10332751
      sex: female
    - short_name: mSpeCit3
      biosample_id: SAMEA10332752
      sex: female
  genome_size: 3882659999.5
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mSpeCit2 31.81 Gbp 8.19x 19.4 GiB
mSpeCit3 90.16 Gbp 23.22x 36.5 GiB
Arima mSpeCit2 483.05 Gbp 124.41x 137.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.88 Gbp.
Last upload on 26 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mSpeCit2 PacBio HiFi (.bam) 31.81 Gbp 8.19x 19.4 GiB
Arima 483.05 Gbp 124.41x 137.7 GiB
mSpeCit3 PacBio HiFi (.bam) 90.16 Gbp 23.22x 36.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.88 Gbp.
Last upload on 26 February 2024.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 23 June 2024
mSpeCit3.pri.cur.20240623.fasta.gz (823.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 40 7.71 Mbp 2 258.54 Mbp
20 100 5.62 Mbp 3 232.93 Mbp
30 180 4.34 Mbp 5 175.33 Mbp
40 281 3.44 Mbp 8 155.99 Mbp
50 414 2.51 Mbp 10 139.52 Mbp
60 597 1.77 Mbp 13 131.62 Mbp
70 887 1.00 Mbp 17 87.80 Mbp
80 0 0
90 0 0
100 0 0
0.796x 1934 3.09 Gbp 498 3.09 Gbp
NG based on genome size 3.88 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 23 June 2024
mSpeCit3.alt.cur.20240623.fasta.gz (589.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 294 0.82 Mbp 294 0.82 Mbp
20 954 441.52 Kbp 954 441.52 Kbp
30 2227 212.63 Kbp 2227 212.63 Kbp
40 5484 68.56 Kbp 5484 68.56 Kbp
50 14419 33.35 Kbp 14419 33.35 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.584x 28066 2.27 Gbp 28066 2.27 Gbp
NG based on genome size 3.88 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 28 February 2024
mSpeCit3.MT.20240228.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.