Streptopelia turtur

turtle dove

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bStrTur1: GCA_901699155.2 bStrTur1: GCA_901699165.2
ENA bStrTur1: GCA_901699155.2 bStrTur1: GCA_901699165.2
UCSC Genome Browser bStrTur1: GCA_901699155.2 bStrTur1: GCA_901699165.2

metadata.yaml (view) (edit on github)
species:
  short_name: bStrTur
  name: Streptopelia turtur
  taxon_id: 177155
  common_name: turtle dove
  order:
    name: Columbiformes
  family:
    name: Columbidae
  individuals:
    - short_name: bStrTur1
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.0 Juan Emilio (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bStrTur1 61.69 Gbp 52.33x 107.9 GiB
10x bStrTur1 131.88 Gbp 111.86x 81.0 GiB
Bionano bStrTur1 N/A 294.91x 545.8 MiB
Arima bStrTur1 125.06 Gbp 106.08x 58.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.18 Gbp.
Last upload on 29 January 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bStrTur1 PacBio CLR 61.69 Gbp 52.33x 107.9 GiB
10x 131.88 Gbp 111.86x 81.0 GiB
Bionano N/A 294.91x 545.8 MiB
Arima 125.06 Gbp 106.08x 58.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.18 Gbp.
Last upload on 29 January 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
bStrTur1.pri.cur.20190523.fasta.gz (343.8 MiB)

Quality: 223.0 errors/Mb (QV=36.52)

Contigs Scaffolds
NG LG Len LG Len
10 8 10.62 Mbp 0 221.44 Mbp
20 21 7.85 Mbp 1 169.96 Mbp
30 38 6.16 Mbp 1 169.96 Mbp
40 60 4.72 Mbp 2 125.29 Mbp
50 88 3.73 Mbp 3 80.15 Mbp
60 122 2.96 Mbp 5 70.85 Mbp
70 169 2.10 Mbp 8 34.57 Mbp
80 242 1.21 Mbp 12 22.27 Mbp
90 399 478.08 Kbp 19 10.84 Mbp
100 1250 222 bp 356 5.49 Kbp
1.000x 1251 1.18 Gbp 357 1.18 Gbp
NG based on genome size 1.18 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
bStrTur1.alt.cur.20190523.fasta.gz (307.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 35 2.23 Mbp 35 2.23 Mbp
20 89 1.68 Mbp 89 1.68 Mbp
30 159 1.29 Mbp 159 1.29 Mbp
40 250 1.01 Mbp 250 1.01 Mbp
50 368 0.78 Mbp 368 0.78 Mbp
60 523 0.58 Mbp 523 0.58 Mbp
70 736 409.15 Kbp 736 409.15 Kbp
80 1055 255.11 Kbp 1055 255.11 Kbp
90 1635 125.98 Kbp 1635 125.98 Kbp
100 3332 243 bp 3332 243 bp
1.000x 3333 1.04 Gbp 3333 1.04 Gbp
NG based on genome size 1.18 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.