Strigops habroptilus

kākāpō

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bStrHab1: GCA_004027225.2 bStrHab1: GCA_004011185.1
ENA bStrHab1: GCA_004027225.2 bStrHab1: GCA_004011185.1
UCSC Genome Browser bStrHab1: GCA_004027225.2 bStrHab1: GCA_004011185.1

metadata.yaml (view) (edit on github)
species:
  short_name: bStrHab
  name: Strigops habroptilus
  taxon_id: 57251
  common_name: kākāpō
  order:
    name: Psittaciformes
  family:
    name: Psittacidae
  individuals:
    - short_name: bStrHab1
  genome_size: 1193409022
  genome_size_method:
  project: [ vgp ]
CC BY-NC 2.0 Jake Osborne (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bStrHab1 106.19 Gbp 88.98x 388.3 GiB
10x bStrHab1 132.33 Gbp 110.88x 63.4 GiB
Bionano bStrHab1 N/A 548.36x 852.0 MiB
Arima bStrHab1 116.00 Gbp 97.20x 60.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.19 Gbp.
Last upload on 15 September 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bStrHab1 PacBio CLR 106.19 Gbp 88.98x 388.3 GiB
10x 132.33 Gbp 110.88x 63.4 GiB
Bionano N/A 548.36x 852.0 MiB
Arima 116.00 Gbp 97.20x 60.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.19 Gbp.
Last upload on 15 September 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 November 2019
bStrHab1.pri.cur.20191108.fasta.gz (332.9 MiB)

Quality: 47.8 errors/Mb (QV=43.21)

Contigs Scaffolds
NG LG Len LG Len
10 4 19.20 Mbp 0 155.64 Mbp
20 12 15.35 Mbp 1 123.02 Mbp
30 20 13.03 Mbp 2 101.87 Mbp
40 30 11.19 Mbp 4 86.46 Mbp
50 42 9.11 Mbp 5 83.24 Mbp
60 56 6.98 Mbp 7 70.13 Mbp
70 75 5.25 Mbp 8 63.49 Mbp
80 104 3.19 Mbp 11 39.19 Mbp
90 165 0.91 Mbp 16 12.31 Mbp
100 0 0
0.954x 462 1.14 Gbp 89 1.15 Gbp
NG based on genome size 1.19 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 December 2018
bStrHab1.alt.cur.20181211.fasta.gz (85.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 323 192.86 Kbp 323 192.86 Kbp
20 1778 36.79 Kbp 1771 37.13 Kbp
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.239x 3739 285.70 Mbp 3728 285.71 Mbp
NG based on genome size 1.19 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 11 December 2018
bStrHab1.pri.cur.20181211.MT.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.