Styela clava

A solitary sea squirt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kaStyClav
  name: Styela clava
  taxon_id: 7725
  common_name: A solitary sea squirt
  order:
    name: Stolidobranchia
  family:
    name: Styelidae
  individuals:
    - short_name: kaStyClav1
      biosample_id: SAMEA7536473
      sex:
  genome_size: 723720000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaStyClav1 3.96 Gbp 5.47x 2.5 GiB
Arima kaStyClav1 292.90 Gbp 404.71x 84.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.72 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaStyClav1 PacBio HiFi (.bam) 3.96 Gbp 5.47x 2.5 GiB
Arima 292.90 Gbp 404.71x 84.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.72 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 24 July 2024
kaStyClav1.hap1.cur.20240724.fasta.gz (102.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 22.63 Mbp 3 25.59 Mbp
20 7 19.89 Mbp 6 24.30 Mbp
30 11 16.60 Mbp 9 23.51 Mbp
40 17 7.48 Mbp 12 21.36 Mbp
50 43 313.15 Kbp 17 479.69 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.522x 423 377.96 Mbp 389 377.97 Mbp
NG based on genome size 0.72 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 24 July 2024
kaStyClav1.hap2.cur.20240724.fasta.gz (103.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 21.12 Mbp 3 26.03 Mbp
20 7 19.61 Mbp 6 24.94 Mbp
30 11 17.77 Mbp 9 24.29 Mbp
40 18 6.80 Mbp 12 21.79 Mbp
50 38 1.42 Mbp 16 3.88 Mbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.527x 269 381.58 Mbp 243 381.58 Mbp
NG based on genome size 0.72 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 April 2024
kaStyClav1.MT.20240404.fasta.gz (4.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.