Syngnathus acus
greater pipefish
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fSynAcu1: GCA_901709675.2 fSynAcu2: GCA_948146105.1 | fSynAcu1: GCA_901709685.1 fSynAcu2: GCA_948146095.1 |
ENA | fSynAcu1: GCA_901709675.2 fSynAcu2: GCA_948146105.1 | fSynAcu1: GCA_901709685.1 fSynAcu2: GCA_948146095.1 |
UCSC Genome Browser | fSynAcu1: GCA_901709675.2 fSynAcu2: GCA_948146105.1 | fSynAcu1: GCA_901709685.1 fSynAcu2: GCA_948146095.1 |
metadata.yaml (view) (edit on github) |
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CC BY 3.0 Roberto Pillon (wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 324.33 Mbp.
Last upload on 9 February 2023.
Coverage based on genome size 324.33 Mbp.
Last upload on 9 February 2023.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 324.33 Mbp.
Last upload on 9 February 2023.
Coverage based on genome size 324.33 Mbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
fSynAcu1.pri.cur.20190523.fasta.gz (87.1 MiB)
Quality: 46.9 errors/Mb (QV=43.29)
Version assembly_curated from 23 May 2019
fSynAcu1.pri.cur.20190523.fasta.gz (87.1 MiB)
Quality: 46.9 errors/Mb (QV=43.29)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 21.59 Mbp | 1 | 25.82 Mbp |
20 | 2 | 20.01 Mbp | 2 | 21.53 Mbp |
30 | 5 | 14.54 Mbp | 4 | 18.45 Mbp |
40 | 7 | 12.36 Mbp | 5 | 17.68 Mbp |
50 | 10 | 11.96 Mbp | 7 | 14.97 Mbp |
60 | 12 | 11.04 Mbp | 10 | 14.38 Mbp |
70 | 16 | 8.69 Mbp | 12 | 12.11 Mbp |
80 | 20 | 7.08 Mbp | 15 | 10.59 Mbp |
90 | 25 | 5.33 Mbp | 18 | 8.88 Mbp |
100 | 129 | 3.53 Kbp | 86 | 28.06 Kbp |
1.000x | 130 | 324.32 Mbp | 87 | 324.33 Mbp |
NG based on genome size 324.33 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
fSynAcu1.alt.cur.20190523.fasta.gz (70.6 MiB)
Quality: not computed
Version assembly_curated from 23 May 2019
fSynAcu1.alt.cur.20190523.fasta.gz (70.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 39 | 423.41 Kbp | 39 | 423.41 Kbp |
20 | 102 | 326.76 Kbp | 102 | 326.76 Kbp |
30 | 182 | 262.91 Kbp | 182 | 262.91 Kbp |
40 | 283 | 211.92 Kbp | 283 | 212.28 Kbp |
50 | 406 | 169.50 Kbp | 406 | 170.06 Kbp |
60 | 560 | 138.94 Kbp | 559 | 139.50 Kbp |
70 | 749 | 111.39 Kbp | 748 | 111.88 Kbp |
80 | 985 | 89.40 Kbp | 983 | 89.52 Kbp |
90 | 1288 | 65.63 Kbp | 1286 | 65.63 Kbp |
100 | 1849 | 160 bp | 1847 | 160 bp |
1.000x | 1850 | 234.86 Mbp | 1848 | 234.86 Mbp |
NG based on genome size 324.33 Mbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fSynAcu1.MT.20191003.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 3 October 2019
fSynAcu1.MT.20191003.fasta.gz (5.0 KiB)
Quality: not computed
Individual 2 Primary Assembly
Version assembly_curated from 8 March 2023
fSynAcu2.pri.cur.20230308.fasta.gz (98.9 MiB)
Quality: not computed
Version assembly_curated from 8 March 2023
fSynAcu2.pri.cur.20230308.fasta.gz (98.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 7.31 Mbp | 1 | 26.17 Mbp |
20 | 9 | 6.45 Mbp | 2 | 22.32 Mbp |
30 | 14 | 5.92 Mbp | 4 | 18.93 Mbp |
40 | 21 | 5.36 Mbp | 6 | 17.52 Mbp |
50 | 28 | 4.93 Mbp | 8 | 15.28 Mbp |
60 | 36 | 3.59 Mbp | 11 | 13.90 Mbp |
70 | 47 | 3.03 Mbp | 13 | 12.68 Mbp |
80 | 61 | 2.12 Mbp | 17 | 10.14 Mbp |
90 | 87 | 0.96 Mbp | 20 | 8.59 Mbp |
100 | 345 | 1.00 Kbp | 250 | 1.00 Kbp |
1.000x | 346 | 359.20 Mbp | 251 | 359.22 Mbp |
NG based on genome size 324.33 Mbp.
Individual 2 Alternate Assembly
Version assembly_curated from 8 March 2023
fSynAcu2.alt.cur.20230308.fasta.gz (94.4 MiB)
Quality: not computed
Version assembly_curated from 8 March 2023
fSynAcu2.alt.cur.20230308.fasta.gz (94.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 63 | 336.40 Kbp | 63 | 336.40 Kbp |
20 | 188 | 225.53 Kbp | 188 | 225.53 Kbp |
30 | 361 | 170.13 Kbp | 361 | 170.13 Kbp |
40 | 580 | 136.13 Kbp | 580 | 136.13 Kbp |
50 | 858 | 106.99 Kbp | 858 | 106.99 Kbp |
60 | 1214 | 81.92 Kbp | 1214 | 81.92 Kbp |
70 | 1678 | 63.68 Kbp | 1678 | 63.68 Kbp |
80 | 2296 | 46.10 Kbp | 2296 | 46.10 Kbp |
90 | 3156 | 33.07 Kbp | 3156 | 33.07 Kbp |
100 | 4532 | 8.36 Kbp | 4532 | 8.36 Kbp |
1.000x | 4533 | 334.24 Mbp | 4533 | 334.24 Mbp |
NG based on genome size 324.33 Mbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.