Tachyglossus aculeatus

short-beaked echidna

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mTacAcu1: GCA_015852505.1 mTacAcu1: GCA_015852515.1
ENA mTacAcu1: GCA_015852505.1 mTacAcu1: GCA_015852515.1
UCSC Genome Browser mTacAcu1: GCA_015852505.1 mTacAcu1: GCA_015852515.1

metadata.yaml (view) (edit on github)
species:
  common_name: short-beaked echidna
  family:
    name: Tachyglossidae
  genome_size: 2890000000
  genome_size_method: null
  individuals:
  - short_name: mTacAcu1
  name: Tachyglossus aculeatus
  order:
    name: Monotremata
  short_name: mTacAcu
  taxon_id: 9261
  project: [ vgp ]
CC BY-SA 3.0 JKMelville (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mTacAcu1 168.41 Gbp 58.27x 606.8 GiB
10x mTacAcu1 270.18 Gbp 93.49x 126.3 GiB
Bionano mTacAcu1 N/A 246.21x 1.1 GiB
Phase mTacAcu1 42.54 Gbp 14.72x 23.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.89 Gbp.
Last upload on 19 March 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mTacAcu1 PacBio CLR 168.41 Gbp 58.27x 606.8 GiB
10x 270.18 Gbp 93.49x 126.3 GiB
Bionano N/A 246.21x 1.1 GiB
Phase 42.54 Gbp 14.72x 23.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.89 Gbp.
Last upload on 19 March 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 September 2020
mTacAcu1.pri.cur.20200917.fasta.gz (602.9 MiB)

Quality: 34.2 errors/Mb (QV=44.66)

Contigs Scaffolds
NG LG Len LG Len
10 5 42.50 Mbp 1 171.48 Mbp
20 14 29.89 Mbp 3 136.33 Mbp
30 25 23.47 Mbp 6 84.22 Mbp
40 38 19.15 Mbp 10 63.38 Mbp
50 57 12.24 Mbp 15 59.61 Mbp
60 87 6.65 Mbp 21 40.09 Mbp
70 177 1.42 Mbp 31 17.06 Mbp
80 0 0
90 0 0
100 0 0
0.755x 834 2.18 Gbp 309 2.21 Gbp
NG based on genome size 2.89 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 17 September 2020
mTacAcu1.alt.cur.20200917.fasta.gz (519.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 72 2.78 Mbp 72 2.78 Mbp
20 212 1.65 Mbp 212 1.65 Mbp
30 434 1.06 Mbp 434 1.07 Mbp
40 778 0.69 Mbp 774 0.69 Mbp
50 1296 448.05 Kbp 1289 451.62 Kbp
60 2191 217.19 Kbp 2176 219.51 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.652x 3508 1.88 Gbp 3482 1.89 Gbp
NG based on genome size 2.89 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mTacAcu1.MT.20191003.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.