Takifugu rubripes

torafugu

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fTakRub1: GCA_901000725.3 fTakRub1: GCA_901000745.3
ENA fTakRub1: GCA_901000725.3 fTakRub1: GCA_901000745.3
UCSC Genome Browser fTakRub1: GCA_901000725.3 fTakRub1: GCA_901000745.3

metadata.yaml (view) (edit on github)
species:
  short_name: fTakRub
  name: Takifugu rubripes
  taxon_id: 31033
  common_name: torafugu
  order:
    name: Tetraodontiformes
  family:
    name: Tetraodontidae
  individuals:
    - short_name: fTakRub1
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.5 OpenCage (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fTakRub1 31.90 Gbp 83.05x 56.0 GiB
10x fTakRub1 115.43 Gbp 300.51x 73.9 GiB
Bionano fTakRub1 N/A 877.69x 464.3 MiB
Arima fTakRub1 38.03 Gbp 99.00x 19.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 384.11 Mbp.
Last upload on 29 August 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fTakRub1 PacBio CLR 31.90 Gbp 83.05x 56.0 GiB
10x 115.43 Gbp 300.51x 73.9 GiB
Bionano N/A 877.69x 464.3 MiB
Arima 38.03 Gbp 99.00x 19.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 384.11 Mbp.
Last upload on 29 August 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
fTakRub1.pri.cur.20190523.fasta.gz (108.4 MiB)

Quality: 171.0 errors/Mb (QV=37.67)

Contigs Scaffolds
NG LG Len LG Len
10 3 8.18 Mbp 1 21.51 Mbp
20 8 6.77 Mbp 3 19.72 Mbp
30 15 5.37 Mbp 5 18.24 Mbp
40 23 3.79 Mbp 7 17.48 Mbp
50 34 3.14 Mbp 9 16.71 Mbp
60 48 2.47 Mbp 12 16.06 Mbp
70 68 1.65 Mbp 14 15.69 Mbp
80 101 0.78 Mbp 17 13.57 Mbp
90 180 272.77 Kbp 19 12.91 Mbp
100 528 1.29 Kbp 126 27.23 Kbp
1.000x 529 380.42 Mbp 127 384.11 Mbp
NG based on genome size 384.11 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
fTakRub1.alt.cur.20190523.fasta.gz (101.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 29 0.83 Mbp 27 0.88 Mbp
20 80 0.57 Mbp 77 0.60 Mbp
30 151 427.91 Kbp 146 436.82 Kbp
40 243 334.87 Kbp 236 345.03 Kbp
50 359 266.41 Kbp 349 276.39 Kbp
60 505 214.46 Kbp 491 219.89 Kbp
70 689 168.39 Kbp 672 171.94 Kbp
80 927 128.10 Kbp 906 130.76 Kbp
90 1258 84.91 Kbp 1232 86.41 Kbp
100 2049 103 bp 2011 103 bp
1.000x 2050 349.39 Mbp 2012 350.02 Mbp
NG based on genome size 384.11 Mbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fTakRub1.MT.20191003.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.