Telmatherina bonti

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fTelBon1: GCA_933228915.1 fTelBon1: GCA_933228925.1
ENA fTelBon1: GCA_933228915.1 fTelBon1: GCA_933228925.1
UCSC Genome Browser fTelBon1: GCA_933228915.1 fTelBon1: GCA_933228925.1

metadata.yaml (view) (edit on github)
species:
  short_name: fTelBon
  name: Telmatherina bonti
  taxon_id: 446457
  common_name:
  order:
    name: Atheriniformes
  family:
    name: Telmatherinidae
  individuals:
    - short_name: fTelBon1
      biosample_id: SAMEA8592627
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
Copyright Aquatic Arts LLC, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fTelBon1 33.79 Gbp 34.27x 22.8 GiB
Arima fTelBon1 102.01 Gbp 103.46x 32.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.99 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fTelBon1 PacBio HiFi (.bam) 33.79 Gbp 34.27x 22.8 GiB
Arima 102.01 Gbp 103.46x 32.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.99 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 7 March 2022
fTelBon1.pri.cur.20220307.fasta.gz (248.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 3.07 Mbp 2 45.68 Mbp
20 64 2.21 Mbp 4 43.20 Mbp
30 114 1.77 Mbp 6 42.78 Mbp
40 174 1.51 Mbp 8 42.36 Mbp
50 245 1.25 Mbp 11 41.52 Mbp
60 333 1.03 Mbp 13 41.02 Mbp
70 442 0.80 Mbp 16 40.41 Mbp
80 585 0.58 Mbp 18 39.80 Mbp
90 794 359.76 Kbp 21 35.39 Mbp
100 1474 1.00 Kbp 145 1.00 Kbp
1.000x 1475 0.99 Gbp 146 0.99 Gbp
NG based on genome size 0.99 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 7 March 2022
fTelBon1.alt.cur.20220307.fasta.gz (199.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 72 0.84 Mbp 72 0.84 Mbp
20 182 0.62 Mbp 182 0.62 Mbp
30 324 497.59 Kbp 324 497.59 Kbp
40 500 399.94 Kbp 500 399.94 Kbp
50 718 323.02 Kbp 718 323.02 Kbp
60 990 257.96 Kbp 990 257.96 Kbp
70 1336 198.56 Kbp 1336 198.56 Kbp
80 1801 141.47 Kbp 1801 141.47 Kbp
90 2530 78.05 Kbp 2530 78.05 Kbp
100 4618 3.15 Kbp 4618 3.15 Kbp
1.000x 4619 0.78 Gbp 4619 0.78 Gbp
NG based on genome size 0.99 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.