Tetrao urogallus

western capercaillie

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bTetUro1: GCA_951394365.1 bTetUro1: GCA_951394355.1
ENA bTetUro1: GCA_951394365.1 bTetUro1: GCA_951394355.1
UCSC Genome Browser bTetUro1: GCA_951394365.1 bTetUro1: GCA_951394355.1

metadata.yaml (view) (edit on github)
species:
  short_name: bTetUro
  name: Tetrao urogallus
  taxon_id: 100830
  common_name: western capercaillie
  order:
    name: Galliformes
  family:
    name: Phasianidae
  individuals:
    - short_name: bTetUro1
      biosample_id: SAMEA9654429
      sex: male
  genome_size: 1290960000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bTetUro1 23.84 Gbp 18.47x 13.7 GiB
Arima bTetUro1 148.25 Gbp 114.84x 43.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.29 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bTetUro1 PacBio HiFi (.bam) 23.84 Gbp 18.47x 13.7 GiB
Arima 148.25 Gbp 114.84x 43.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.29 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 May 2023
bTetUro1.pri.cur.20230511.fasta.gz (293.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 4.52 Mbp 1 193.92 Mbp
20 55 3.44 Mbp 2 110.12 Mbp
30 98 2.56 Mbp 3 93.28 Mbp
40 158 1.84 Mbp 5 71.40 Mbp
50 240 1.30 Mbp 7 59.51 Mbp
60 356 0.94 Mbp 10 23.44 Mbp
70 535 0.54 Mbp 17 14.53 Mbp
80 0 0
90 0 0
100 0 0
0.785x 1291 1.01 Gbp 318 1.01 Gbp
NG based on genome size 1.29 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 May 2023
bTetUro1.alt.cur.20230511.fasta.gz (248.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 126 0.78 Mbp 126 0.78 Mbp
20 334 0.52 Mbp 334 0.52 Mbp
30 630 377.05 Kbp 630 377.05 Kbp
40 1042 257.56 Kbp 1042 257.56 Kbp
50 1680 158.44 Kbp 1680 158.44 Kbp
60 2979 59.00 Kbp 2979 59.00 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.661x 5464 0.85 Gbp 5464 0.85 Gbp
NG based on genome size 1.29 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.