Thunnus albacares

yellowfin tuna

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fThuAlb1: GCA_914725855.1 fThuAlb1: GCA_914744365.1
ENA fThuAlb1: GCA_914725855.1 fThuAlb1: GCA_914744365.1
UCSC Genome Browser fThuAlb1: GCA_914725855.1 fThuAlb1: GCA_914744365.1

metadata.yaml (view) (edit on github)
species:
  short_name: fThuAlb
  name: Thunnus albacares
  taxon_id: 8236
  common_name: yellowfin tuna
  order:
    name: Perciformes
  family:
    name: Scombridae
  individuals:
    - short_name: fThuAlb1
      biosample_id: SAMEA8654749
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY 2.0, Elias Levy (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fThuAlb1 46.58 Gbp 58.81x 165.0 GiB
10x fThuAlb1 59.35 Gbp 74.92x 29.6 GiB
Arima fThuAlb1 75.53 Gbp 95.36x 37.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.79 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fThuAlb1 PacBio HiFi (.bam) 46.58 Gbp 58.81x 165.0 GiB
10x 59.35 Gbp 74.92x 29.6 GiB
Arima 75.53 Gbp 95.36x 37.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.79 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 27 August 2021
fThuAlb1.pri.cur.20210827.fasta.gz (228.1 MiB)

Quality: 3.5 errors/Mb (QV=54.52)

Contigs Scaffolds
NG LG Len LG Len
10 2 33.90 Mbp 1 39.74 Mbp
20 4 33.74 Mbp 4 36.94 Mbp
30 6 32.23 Mbp 6 35.59 Mbp
40 9 31.06 Mbp 8 35.39 Mbp
50 12 26.80 Mbp 10 34.62 Mbp
60 15 23.33 Mbp 13 32.03 Mbp
70 19 16.20 Mbp 15 30.70 Mbp
80 24 13.99 Mbp 18 30.33 Mbp
90 31 7.49 Mbp 20 28.23 Mbp
100 138 10.12 Kbp 68 10.12 Kbp
1.000x 139 0.79 Gbp 69 0.79 Gbp
NG based on genome size 0.79 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 27 August 2021
fThuAlb1.alt.cur.20210827.fasta.gz (227.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 10.80 Mbp 5 10.80 Mbp
20 13 9.03 Mbp 13 9.03 Mbp
30 24 6.71 Mbp 24 6.71 Mbp
40 37 5.29 Mbp 37 5.29 Mbp
50 54 4.12 Mbp 54 4.12 Mbp
60 75 3.34 Mbp 75 3.34 Mbp
70 102 2.43 Mbp 102 2.43 Mbp
80 143 1.57 Mbp 143 1.57 Mbp
90 208 0.91 Mbp 208 0.91 Mbp
100 639 4.27 Kbp 639 4.27 Kbp
1.000x 640 0.79 Gbp 640 0.79 Gbp
NG based on genome size 0.79 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.