Thunnus maccoyii

Southern bluefin tuna

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fThuMac1: GCA_910596095.1 fThuMac1: GCA_910596085.1
ENA fThuMac1: GCA_910596095.1 fThuMac1: GCA_910596085.1
UCSC Genome Browser fThuMac1: GCA_910596095.1 fThuMac1: GCA_910596085.1

metadata.yaml (view) (edit on github)
species:
  short_name: fThuMac
  name: Thunnus maccoyii
  taxon_id: 8240
  common_name: Southern bluefin tuna
  order:
    name: Perciformes
  family:
    name: Scombridae
  individuals:
    - short_name: fThuMac1
      biosample_id: SAMEA8654747
      sex: male
  genome_size:
  genome_size_method:
  project: [ vgp ]
public domain Robbie Cada. (FishBase)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fThuMac1 36.02 Gbp 46.04x 31.3 GiB
10x fThuMac1 65.60 Gbp 83.84x 39.2 GiB
Arima fThuMac1 100.19 Gbp 128.05x 48.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fThuMac1 PacBio HiFi (.bam) 36.02 Gbp 46.04x 31.3 GiB
10x 65.60 Gbp 83.84x 39.2 GiB
Arima 100.19 Gbp 128.05x 48.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 7 April 2021
fThuMac1.pri.cur.20210407.fasta.gz (226.1 MiB)

Quality: 2.5 errors/Mb (QV=56.02)

Contigs Scaffolds
NG LG Len LG Len
10 2 33.35 Mbp 1 38.77 Mbp
20 4 31.76 Mbp 4 35.58 Mbp
30 7 29.67 Mbp 6 35.25 Mbp
40 9 29.01 Mbp 8 35.07 Mbp
50 12 26.80 Mbp 10 33.76 Mbp
60 15 26.28 Mbp 13 31.54 Mbp
70 19 19.96 Mbp 15 30.47 Mbp
80 24 12.11 Mbp 18 29.77 Mbp
90 35 4.26 Mbp 21 26.96 Mbp
100 152 8.77 Kbp 57 8.77 Kbp
1.000x 153 0.78 Gbp 58 0.78 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 7 April 2021
fThuMac1.alt.cur.20210407.fasta.gz (226.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 6.44 Mbp 9 6.44 Mbp
20 23 4.93 Mbp 23 4.93 Mbp
30 41 3.64 Mbp 41 3.64 Mbp
40 65 3.04 Mbp 65 3.04 Mbp
50 93 2.44 Mbp 93 2.44 Mbp
60 130 1.85 Mbp 130 1.85 Mbp
70 177 1.49 Mbp 177 1.49 Mbp
80 242 1.00 Mbp 242 1.00 Mbp
90 343 0.58 Mbp 343 0.58 Mbp
100 894 9.81 Kbp 894 9.81 Kbp
1.000x 895 0.78 Gbp 895 0.78 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 January 2021
fThuMac1.MT.20210129.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.