Trichosurus vulpecula

common brushtail possum

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mTriVul1: GCA_011100635.1 mTriVul1: GCA_011100645.1
ENA mTriVul1: GCA_011100635.1 mTriVul1: GCA_011100645.1
UCSC Genome Browser mTriVul1: GCA_011100635.1 mTriVul1: GCA_011100645.1

metadata.yaml (view) (edit on github)
species:
  common_name: common brushtail possum
  family:
    name: Phalangeridae
  genome_size: 3000000000
  genome_size_method: null
  individuals:
  - short_name: mTriVul1
  name: Trichosurus vulpecula
  order:
    name: Diprotodontia
  short_name: mTriVul
  taxon_id: 9337
  project: [ vgp ]
CC BY 2.0 Donald Hobern (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mTriVul1 182.26 Gbp 60.75x 315.5 GiB
10x mTriVul1 246.68 Gbp 82.23x 115.6 GiB
Bionano mTriVul1 N/A 197.07x 1.1 GiB
Arima mTriVul1 441.83 Gbp 147.28x 227.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.00 Gbp.
Last upload on 17 May 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mTriVul1 PacBio CLR 182.26 Gbp 60.75x 315.5 GiB
10x 246.68 Gbp 82.23x 115.6 GiB
Bionano N/A 197.07x 1.1 GiB
Arima 441.83 Gbp 147.28x 227.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.00 Gbp.
Last upload on 17 May 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 January 2020
mTriVul1.pri.cur.20200115.fasta.gz (0.9 GiB)

Quality: 44.9 errors/Mb (QV=43.48)

Contigs Scaffolds
NG LG Len LG Len
10 15 13.76 Mbp 0 0.57 Gbp
20 41 9.81 Mbp 1 463.07 Mbp
30 76 7.41 Mbp 1 463.07 Mbp
40 122 5.81 Mbp 2 445.41 Mbp
50 179 4.82 Mbp 3 442.56 Mbp
60 248 4.01 Mbp 3 442.56 Mbp
70 332 3.13 Mbp 4 310.11 Mbp
80 447 2.22 Mbp 5 285.15 Mbp
90 605 1.59 Mbp 6 275.47 Mbp
100 849 0.94 Mbp 7 267.64 Mbp
1.114x 2007 3.34 Gbp 211 3.36 Gbp
NG based on genome size 3.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 January 2020
mTriVul1.alt.cur.20200115.fasta.gz (756.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 142 1.56 Mbp 142 1.56 Mbp
20 381 1.06 Mbp 381 1.06 Mbp
30 709 0.80 Mbp 709 0.80 Mbp
40 1143 0.60 Mbp 1143 0.60 Mbp
50 1722 438.28 Kbp 1722 438.28 Kbp
60 2552 297.89 Kbp 2552 297.89 Kbp
70 3898 162.46 Kbp 3897 163.04 Kbp
80 6931 62.47 Kbp 6895 63.50 Kbp
90 0 0
100 0 0
0.864x 12446 2.59 Gbp 12133 2.59 Gbp
NG based on genome size 3.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
mTriVul1.MT.20191004.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.