Trisopterus luscus

Not provided by NCBI taxonomy

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fTriLus
  name: Trisopterus luscus
  taxon_id: 27722
  common_name: Not provided by NCBI taxonomy
  order:
    name: Gadiformes
  family:
    name: Gadidae
  individuals:
    - short_name: fTriLus1
      biosample_id: SAMEA114298638
      sex:
  genome_size: 860640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fTriLus1 24.83 Gbp 28.85x 7.9 GiB
Arima fTriLus1 86.63 Gbp 100.66x 25.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fTriLus1 PacBio HiFi (.bam) 24.83 Gbp 28.85x 7.9 GiB
Arima 86.63 Gbp 100.66x 25.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 18 November 2025
fTriLus1.hap1.cur.20251118.fasta.gz (149.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 67 0.80 Mbp 4 20.88 Mbp
20 212 448.65 Kbp 9 18.69 Mbp
30 458 274.05 Kbp 13 18.09 Mbp
40 873 157.58 Kbp 18 16.22 Mbp
50 1664 76.66 Kbp 24 11.54 Mbp
60 3493 29.03 Kbp 577 42.75 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.637x 5198 0.55 Gbp 2153 0.55 Gbp
NG based on genome size 0.86 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 18 November 2025
fTriLus1.hap2.cur.20251118.fasta.gz (144.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 70 0.80 Mbp 5 20.29 Mbp
20 222 436.17 Kbp 9 19.42 Mbp
30 478 263.24 Kbp 14 16.51 Mbp
40 918 149.45 Kbp 19 13.94 Mbp
50 1739 74.48 Kbp 67 400.00 Kbp
60 3712 24.61 Kbp 892 31.96 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.615x 4545 0.53 Gbp 1704 0.53 Gbp
NG based on genome size 0.86 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 24 May 2024
fTriLus1.MT.20240524.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.