Vidua chalybeata

village indigobird

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bVidCha1: GCA_026979555.1 bVidCha1: GCA_026979565.1
ENA bVidCha1: GCA_026979555.1 bVidCha1: GCA_026979565.1
UCSC Genome Browser bVidCha1: GCA_026979555.1 bVidCha1: GCA_026979565.1

metadata.yaml (view) (edit on github)
species:
  common_name: village indigobird
  family:
    name: Viduidae
  genome_size: 1160000000
  genome_size_method: null
  individuals:
  - short_name: bVidCha1
  name: Vidua chalybeata
  order:
    name: Passeriformes
  short_name: bVidCha
  taxon_id: 81927
  project: [ vgp ]
CC BY 2.0 Derek Keats (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bVidCha1 33.93 Gbp 29.25x 121.2 GiB
Arima bVidCha2 111.71 Gbp 96.30x 69.2 GiB
Illumina bVidCha1 86.65 Gbp 74.70x 45.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.16 Gbp.
Last upload on 12 January 2021.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bVidCha1 PacBio CLR 33.93 Gbp 29.25x 121.2 GiB
Illumina 86.65 Gbp 74.70x 45.1 GiB
bVidCha2 Arima 111.71 Gbp 96.30x 69.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.16 Gbp.
Last upload on 12 January 2021.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 January 2022
bVidCha1.pri.cur.20220117.fasta.gz (310.9 MiB)

Quality: 25.2 errors/Mb (QV=45.99)

Contigs Scaffolds
NG LG Len LG Len
10 1 39.55 Mbp 0 153.57 Mbp
20 4 31.97 Mbp 1 116.63 Mbp
30 9 21.93 Mbp 2 113.81 Mbp
40 16 16.75 Mbp 4 73.12 Mbp
50 23 13.83 Mbp 5 72.55 Mbp
60 33 8.52 Mbp 7 39.30 Mbp
70 53 4.25 Mbp 11 21.61 Mbp
80 97 1.71 Mbp 17 15.24 Mbp
90 235 348.37 Kbp 31 3.18 Mbp
100 0 0
0.931x 636 1.08 Gbp 178 1.08 Gbp
NG based on genome size 1.16 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 17 January 2022
bVidCha1.alt.cur.20220117.fasta.gz (41.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1046 66.24 Kbp 1046 66.24 Kbp
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.134x 1939 154.87 Mbp 1939 154.87 Mbp
NG based on genome size 1.16 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_vgp_standard_1.6 from 2 April 2021
bVidCha1.MT.20210402.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.