Zootoca vivipara

common lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rZooViv
  name: Zootoca vivipara
  taxon_id: 8524
  common_name: common lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rZooViv1
      biosample_id: SAMEA111528662
      sex: female
  genome_size: 1349640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rZooViv1 42.13 Gbp 31.22x 109.2 GiB
Arima rZooViv1 63.95 Gbp 47.39x 19.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 13 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rZooViv1 PacBio HiFi (.bam) 42.13 Gbp 31.22x 109.2 GiB
Arima 63.95 Gbp 47.39x 19.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.35 Gbp.
Last upload on 13 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 September 2023
rZooViv1.pri.cur.20230916.fasta.gz (416.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 9.53 Mbp 1 135.72 Mbp
20 29 7.55 Mbp 3 120.54 Mbp
30 50 5.66 Mbp 4 102.32 Mbp
40 77 4.50 Mbp 5 98.23 Mbp
50 109 3.75 Mbp 6 97.17 Mbp
60 150 2.93 Mbp 8 88.83 Mbp
70 200 2.49 Mbp 10 72.12 Mbp
80 262 1.94 Mbp 12 59.63 Mbp
90 343 1.41 Mbp 14 54.49 Mbp
100 470 0.75 Mbp 17 42.82 Mbp
1.067x 732 1.44 Gbp 49 1.44 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 September 2023
rZooViv1.alt.cur.20230916.fasta.gz (354.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 107 0.93 Mbp 107 0.93 Mbp
20 283 0.64 Mbp 283 0.64 Mbp
30 525 479.85 Kbp 525 479.85 Kbp
40 845 372.35 Kbp 845 372.35 Kbp
50 1260 283.09 Kbp 1260 283.09 Kbp
60 1818 205.75 Kbp 1818 205.75 Kbp
70 2633 133.26 Kbp 2633 133.26 Kbp
80 4052 67.16 Kbp 4052 67.16 Kbp
90 7652 18.82 Kbp 7652 18.82 Kbp
100 0 0
0.905x 8057 1.22 Gbp 8057 1.22 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 3 March 2025
rZooViv1.hap1.cur.20250303.fasta.gz (443.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 7.63 Mbp 1 135.32 Mbp
20 37 5.36 Mbp 3 120.03 Mbp
30 64 4.54 Mbp 4 102.67 Mbp
40 97 3.71 Mbp 5 102.38 Mbp
50 137 3.13 Mbp 6 97.34 Mbp
60 185 2.54 Mbp 8 95.87 Mbp
70 242 2.16 Mbp 9 89.33 Mbp
80 312 1.72 Mbp 11 71.89 Mbp
90 402 1.28 Mbp 13 59.52 Mbp
100 532 0.82 Mbp 16 50.36 Mbp
1.140x 1174 1.54 Gbp 192 1.54 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 3 March 2025
rZooViv1.hap2.cur.20250303.fasta.gz (376.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 7.63 Mbp 1 135.09 Mbp
20 35 5.53 Mbp 3 119.71 Mbp
30 63 4.40 Mbp 4 101.85 Mbp
40 98 3.31 Mbp 5 97.65 Mbp
50 143 2.66 Mbp 7 95.38 Mbp
60 200 2.14 Mbp 8 88.72 Mbp
70 271 1.64 Mbp 10 63.66 Mbp
80 366 1.21 Mbp 12 54.48 Mbp
90 528 0.57 Mbp 15 42.72 Mbp
100 0 0
0.964x 907 1.30 Gbp 109 1.30 Gbp
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 14 August 2023
rZooViv1.MT.20230814.fasta.gz (5.4 KiB)

Quality: not computed
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 12 March 2025
rZooViv2.hap1.cur.20250312.fasta.gz (412.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 84.20 Mbp 2 122.44 Mbp
20 4 80.61 Mbp 3 119.49 Mbp
30 6 61.85 Mbp 4 103.39 Mbp
40 8 42.76 Mbp 5 97.35 Mbp
50 12 35.94 Mbp 7 95.24 Mbp
60 16 29.09 Mbp 8 88.13 Mbp
70 22 19.08 Mbp 10 71.77 Mbp
80 31 11.40 Mbp 12 58.54 Mbp
90 44 8.79 Mbp 14 54.06 Mbp
100 70 3.14 Mbp 17 42.66 Mbp
1.055x 169 1.42 Gbp 61 1.42 Gbp
NG based on genome size 1.35 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 12 March 2025
rZooViv2.hap2.cur.20250312.fasta.gz (412.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 79.28 Mbp 1 135.08 Mbp
20 4 67.25 Mbp 3 119.69 Mbp
30 6 45.56 Mbp 4 102.39 Mbp
40 10 34.87 Mbp 5 97.31 Mbp
50 14 29.14 Mbp 7 95.16 Mbp
60 19 21.09 Mbp 8 88.29 Mbp
70 26 18.21 Mbp 10 71.86 Mbp
80 35 13.01 Mbp 12 59.34 Mbp
90 48 8.69 Mbp 14 53.89 Mbp
100 70 3.85 Mbp 17 42.53 Mbp
1.055x 169 1.42 Gbp 67 1.42 Gbp
NG based on genome size 1.35 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.