Anser fabalis

Taiga bean goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnsFab
  name: Anser fabalis
  taxon_id: 132587
  common_name: Taiga bean goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnsFab1
      biosample_id: SAMEA113398846
      sex: male
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnsFab1 44.90 Gbp 32.56x 13.1 GiB
Arima bAnsFab1 43.63 Gbp 31.64x 12.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 1 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnsFab1 PacBio HiFi (.bam) 44.90 Gbp 32.56x 13.1 GiB
Arima 43.63 Gbp 31.64x 12.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 1 April 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 10 May 2024
bAnsFab1.pri.asm.20240510.fasta.gz (354.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 6.42 Mbp 1 214.00 Mbp
20 43 4.48 Mbp 2 161.12 Mbp
30 77 3.71 Mbp 3 124.47 Mbp
40 120 2.74 Mbp 4 86.82 Mbp
50 179 2.11 Mbp 6 62.34 Mbp
60 256 1.54 Mbp 9 32.88 Mbp
70 366 1.06 Mbp 15 21.60 Mbp
80 533 0.66 Mbp 25 7.65 Mbp
90 859 248.00 Kbp 132 0.51 Mbp
100 0 0
0.956x 1886 1.32 Gbp 930 1.32 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 10 May 2024
bAnsFab1.alt.asm.20240510.fasta.gz (228.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 47 2.09 Mbp 47 2.09 Mbp
20 133 1.30 Mbp 133 1.30 Mbp
30 268 0.81 Mbp 268 0.81 Mbp
40 491 483.82 Kbp 491 483.82 Kbp
50 889 243.29 Kbp 889 243.29 Kbp
60 2106 51.56 Kbp 2106 51.56 Kbp
70 7275 15.25 Kbp 7275 15.25 Kbp
80 0 0
90 0 0
100 0 0
0.714x 8988 0.98 Gbp 8988 0.98 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 May 2024
bAnsFab1.MT.20240510.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.