Branta canadensis

Canada goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bBraCan
  name: Branta canadensis
  taxon_id: 8853
  common_name: Canada goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bBraCan1
      biosample_id: SAMEA113398965
      sex: male
  genome_size: 1388760000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bBraCan1 49.32 Gbp 35.51x 15.0 GiB
Arima bBraCan1 53.39 Gbp 38.45x 15.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.39 Gbp.
Last upload on 1 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bBraCan1 PacBio HiFi (.bam) 49.32 Gbp 35.51x 15.0 GiB
Arima 53.39 Gbp 38.45x 15.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.39 Gbp.
Last upload on 1 April 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 10 May 2024
bBraCan1.pri.asm.20240510.fasta.gz (355.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 10.27 Mbp 1 213.31 Mbp
20 28 7.47 Mbp 2 163.52 Mbp
30 49 5.85 Mbp 3 122.98 Mbp
40 76 4.50 Mbp 4 89.45 Mbp
50 110 3.72 Mbp 6 66.81 Mbp
60 153 2.89 Mbp 9 33.73 Mbp
70 210 2.04 Mbp 14 23.62 Mbp
80 300 1.18 Mbp 23 8.48 Mbp
90 486 396.97 Kbp 90 0.81 Mbp
100 0 0
0.950x 1153 1.32 Gbp 645 1.32 Gbp
NG based on genome size 1.39 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 10 May 2024
bBraCan1.alt.asm.20240510.fasta.gz (317.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 30 3.78 Mbp 30 3.78 Mbp
20 74 2.69 Mbp 74 2.69 Mbp
30 133 2.11 Mbp 133 2.11 Mbp
40 210 1.58 Mbp 210 1.58 Mbp
50 313 1.14 Mbp 313 1.14 Mbp
60 457 0.79 Mbp 457 0.79 Mbp
70 681 471.44 Kbp 681 471.44 Kbp
80 1128 191.52 Kbp 1128 191.52 Kbp
90 3829 15.85 Kbp 3829 15.85 Kbp
100 0 0
0.905x 4452 1.26 Gbp 4452 1.26 Gbp
NG based on genome size 1.39 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 May 2024
bBraCan1.MT.20240510.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.