Caretta caretta

Loggerhead turtle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rCarCar
  name: Caretta caretta
  common_name: Loggerhead turtle
  taxon_id: 8467
  order:
    name: Testudines
  family:
    name: Cheloniidae
  individuals:
  -
        short_name: rCarCar2
  genome_size: 2581920000
  genome_size_method: GoAT
  project: [ vgp ]
CC BY-SA 4.0 Eco cruising (Wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) rCarCar2 607.21 Gbp 235.18x 1.3 TiB
PacBio HiFi (.fq) rCarCar2 119.89 Gbp 46.43x 99.9 GiB
PacBio HiFi (.bam) rCarCar2 120.88 Gbp 46.82x 424.2 GiB
Dovetail Genomics rCarCar2 272.67 Gbp 105.61x 142.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 22 January 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rCarCar2 PacBio HiFi (subreads) 607.21 Gbp 235.18x 1.3 TiB
PacBio HiFi (.fq) 119.89 Gbp 46.43x 99.9 GiB
PacBio HiFi (.bam) 120.88 Gbp 46.82x 424.2 GiB
Dovetail Genomics 272.67 Gbp 105.61x 142.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 22 January 2025.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 22 April 2023
rCarCar2.HiC.hap1.20230422.fasta.gz (646.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 354.29 Mbp 1 355.49 Mbp
20 2 185.93 Mbp 2 271.82 Mbp
30 4 142.03 Mbp 3 212.07 Mbp
40 6 128.51 Mbp 5 137.54 Mbp
50 8 121.38 Mbp 7 127.11 Mbp
60 10 102.30 Mbp 9 103.74 Mbp
70 15 28.00 Mbp 12 49.75 Mbp
80 29 11.70 Mbp 20 23.92 Mbp
90 0 0
100 0 0
0.859x 97 2.22 Gbp 41 2.22 Gbp
NG based on genome size 2.58 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 22 April 2023
rCarCar2.HiC.hap2.20230422.fasta.gz (642.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 186.77 Mbp 1 356.83 Mbp
20 3 147.94 Mbp 2 271.92 Mbp
30 5 141.47 Mbp 3 213.09 Mbp
40 7 122.12 Mbp 5 137.61 Mbp
50 9 116.35 Mbp 7 127.02 Mbp
60 12 71.57 Mbp 9 103.97 Mbp
70 18 33.88 Mbp 12 49.24 Mbp
80 30 13.77 Mbp 21 22.77 Mbp
90 0 0
100 0 0
0.854x 84 2.21 Gbp 35 2.21 Gbp
NG based on genome size 2.58 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.