Phaethon aethereus

red-billed tropicbird

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bPhaAeh
  name: Phaethon aethereus
  taxon_id: 37045
  common_name: red-billed tropicbird
  order:
    name: Pelecaniformes
  family:
    name: Phaethontidae
  individuals:
    - short_name: bPhaAeh10
      biosample_id: SAMEA114294362
      sex:
    - short_name: bPhaAeh3
      biosample_id: SAMEA8228673
      sex: female
    - short_name: bPhaAeh6
      biosample_id: SAMEA8228676
      sex: female
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 2.0, Dominic Sherony (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bPhaAeh3 36.09 Mbp N/A 20.7 MiB
bPhaAeh6 2.53 Mbp N/A 1.7 MiB
bPhaAeh10 35.41 Gbp N/A 9.1 GiB
10x bPhaAeh1 76.10 Gbp N/A 35.9 GiB
Arima bPhaAeh3 124.53 Gbp N/A 60.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPhaAeh1 10x 76.10 Gbp N/A 35.9 GiB
bPhaAeh3 PacBio HiFi (.bam) 36.09 Mbp N/A 20.7 MiB
Arima 124.53 Gbp N/A 60.4 GiB
bPhaAeh6 PacBio HiFi (.bam) 2.53 Mbp N/A 1.7 MiB
bPhaAeh10 PacBio HiFi (.bam) 35.41 Gbp N/A 9.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2024.
Assemblies
Individual 10 Maternal Assembly
Version assembly_cambridge from 4 September 2024
bPhaAeh10.mat.asm.20240904.fasta.gz (354.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 5.64 Mbp 1 223.71 Mbp
20 44 4.31 Mbp 2 171.38 Mbp
30 77 3.35 Mbp 2 171.38 Mbp
40 118 2.70 Mbp 3 130.12 Mbp
50 169 2.12 Mbp 5 72.05 Mbp
60 236 1.59 Mbp 7 41.69 Mbp
70 328 1.18 Mbp 10 29.21 Mbp
80 459 0.75 Mbp 15 21.82 Mbp
90 694 368.41 Kbp 24 7.54 Mbp
100 1879 1.00 Kbp 808 1.00 Kbp
1.000x 1879 1.23 Gbp 808 1.23 Gbp
NG based on genome size .
Individual 10 Paternal Assembly
Version assembly_cambridge from 4 September 2024
bPhaAeh10.pat.asm.20240904.fasta.gz (368.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 5.81 Mbp 1 223.46 Mbp
20 43 4.48 Mbp 2 167.70 Mbp
30 77 3.31 Mbp 2 167.70 Mbp
40 118 2.76 Mbp 3 130.49 Mbp
50 170 2.18 Mbp 5 84.90 Mbp
60 238 1.65 Mbp 7 44.40 Mbp
70 330 1.17 Mbp 10 36.46 Mbp
80 462 0.79 Mbp 14 24.50 Mbp
90 682 418.56 Kbp 22 8.34 Mbp
100 1673 1.00 Kbp 589 1.00 Kbp
1.000x 1673 1.28 Gbp 589 1.28 Gbp
NG based on genome size .
Individual 10 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 September 2024
bPhaAeh10.MT.20240904.fasta.gz (5.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.