Podarcis siculus

Italian wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodSic
  name: Podarcis siculus
  taxon_id: 65484
  common_name: Italian wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodSic1
      biosample_id: SAMEA115336774
      sex: female
  genome_size: 1933995000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodSic1 64.42 Gbp 33.31x 21.5 GiB
Arima rPodSic1 220.54 Gbp 114.03x 59.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 17 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodSic1 PacBio HiFi (.bam) 64.42 Gbp 33.31x 21.5 GiB
Arima 220.54 Gbp 114.03x 59.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 17 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 18 May 2024
rPodSic1.hap1.asm.20240518.fasta.gz (434.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 6.85 Mbp 2 125.19 Mbp
20 55 5.40 Mbp 4 107.23 Mbp
30 98 3.75 Mbp 5 99.34 Mbp
40 156 3.08 Mbp 7 94.54 Mbp
50 226 2.40 Mbp 10 76.91 Mbp
60 321 1.72 Mbp 13 55.36 Mbp
70 459 1.12 Mbp 16 44.77 Mbp
80 806 149.00 Kbp 93 221.92 Kbp
90 0 0
100 0 0
0.807x 1084 1.56 Gbp 343 1.56 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 18 May 2024
rPodSic1.hap2.asm.20240518.fasta.gz (413.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 7.01 Mbp 2 121.50 Mbp
20 52 5.50 Mbp 4 104.85 Mbp
30 93 4.15 Mbp 5 102.04 Mbp
40 147 3.19 Mbp 8 84.60 Mbp
50 216 2.35 Mbp 10 71.18 Mbp
60 318 1.52 Mbp 13 53.92 Mbp
70 487 0.83 Mbp 17 41.65 Mbp
80 0 0
90 0 0
100 0 0
0.758x 861 1.47 Gbp 170 1.47 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 18 May 2024
rPodSic1.MT.20240518.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.