Protomyctophum parallelum

parallel lanternfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fProPar
  name: Protomyctophum parallelum
  taxon_id: 1091426
  common_name: parallel lanternfish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fProPar1
      biosample_id: SAMEA12815440
      sex:
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fProPar1 32.97 Gbp 17.29x 84.3 GiB
Arima fProPar1 209.32 Gbp 109.76x 63.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 19 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fProPar1 PacBio HiFi (.bam) 32.97 Gbp 17.29x 84.3 GiB
Arima 209.32 Gbp 109.76x 63.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 19 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 22 June 2023
fProPar1.pri.asm.20230622.fasta.gz (336.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 55 2.47 Mbp 3 58.18 Mbp
20 150 1.68 Mbp 6 54.10 Mbp
30 291 1.13 Mbp 10 50.33 Mbp
40 494 0.79 Mbp 14 48.34 Mbp
50 806 483.68 Kbp 18 44.98 Mbp
60 1406 205.85 Kbp 23 32.01 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.686x 3810 1.31 Gbp 1047 1.31 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 22 June 2023
fProPar1.alt.asm.20230622.fasta.gz (286.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 214 0.63 Mbp 214 0.63 Mbp
20 599 399.78 Kbp 599 399.78 Kbp
30 1192 258.78 Kbp 1192 258.78 Kbp
40 2135 160.00 Kbp 2135 160.00 Kbp
50 3721 89.93 Kbp 3721 89.93 Kbp
60 7376 29.26 Kbp 7376 29.26 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.629x 9944 1.20 Gbp 9944 1.20 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 June 2023
fProPar1.MT.20230622.fasta.gz (5.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.