Rallus aquaticus

Water rail

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bRalAqu
  name: Rallus aquaticus
  taxon_id: 54496
  common_name: Water rail
  order:
    name: Gruiformes
  family:
    name: Rallidae
  individuals:
    - short_name: bRalAqu1
      biosample_id: SAMEA113398957
      sex: male
  genome_size: 1222500000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bRalAqu1 49.29 Gbp 40.32x 14.0 GiB
Arima bRalAqu1 106.30 Gbp 86.95x 28.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bRalAqu1 PacBio HiFi (.bam) 49.29 Gbp 40.32x 14.0 GiB
Arima 106.30 Gbp 86.95x 28.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.22 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 10 May 2024
bRalAqu1.pri.asm.20240510.fasta.gz (354.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 10.12 Mbp 1 214.56 Mbp
20 24 7.91 Mbp 2 163.29 Mbp
30 41 6.63 Mbp 2 163.29 Mbp
40 61 5.62 Mbp 3 123.81 Mbp
50 87 4.22 Mbp 5 78.38 Mbp
60 119 3.36 Mbp 6 63.99 Mbp
70 161 2.38 Mbp 10 28.67 Mbp
80 224 1.60 Mbp 15 20.85 Mbp
90 338 0.67 Mbp 24 8.29 Mbp
100 916 75.09 Kbp 350 98.22 Kbp
1.039x 2523 1.27 Gbp 1821 1.27 Gbp
NG based on genome size 1.22 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 10 May 2024
bRalAqu1.alt.asm.20240510.fasta.gz (322.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 4.32 Mbp 22 4.32 Mbp
20 56 3.18 Mbp 56 3.18 Mbp
30 101 2.35 Mbp 101 2.35 Mbp
40 158 1.89 Mbp 158 1.89 Mbp
50 228 1.58 Mbp 228 1.58 Mbp
60 317 1.23 Mbp 317 1.23 Mbp
70 433 0.90 Mbp 433 0.90 Mbp
80 598 0.61 Mbp 598 0.61 Mbp
90 871 326.24 Kbp 871 326.24 Kbp
100 1708 65.73 Kbp 1708 65.73 Kbp
1.088x 5878 1.33 Gbp 5878 1.33 Gbp
NG based on genome size 1.22 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 May 2024
bRalAqu1.MT.20240510.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.